miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31890 5' -54.9 NC_006938.1 + 63453 0.66 0.745091
Target:  5'- -cCAcCGCg-UgGGCGACCGGCUCGc -3'
miRNA:   3'- gaGUaGCGgaAgUCGCUGGUCGAGUu -5'
31890 5' -54.9 NC_006938.1 + 23677 0.66 0.74298
Target:  5'- gUCGUCGCCgagcucgaagcCAGCcgcgagGACCAGCUUg- -3'
miRNA:   3'- gAGUAGCGGaa---------GUCG------CUGGUCGAGuu -5'
31890 5' -54.9 NC_006938.1 + 37613 0.66 0.734487
Target:  5'- cCUCGUCcaGCUUgccagcggCGGCGGCCucgAGCUCGGg -3'
miRNA:   3'- -GAGUAG--CGGAa-------GUCGCUGG---UCGAGUU- -5'
31890 5' -54.9 NC_006938.1 + 47836 0.66 0.712976
Target:  5'- -aCAUCGCCUacacaGGCGGCUcGCUCc- -3'
miRNA:   3'- gaGUAGCGGAag---UCGCUGGuCGAGuu -5'
31890 5' -54.9 NC_006938.1 + 49283 0.67 0.691138
Target:  5'- uCUCAUC-CCggaccagggCAGCauGACCGGCUCGu -3'
miRNA:   3'- -GAGUAGcGGaa-------GUCG--CUGGUCGAGUu -5'
31890 5' -54.9 NC_006938.1 + 8291 0.68 0.624587
Target:  5'- ---cUC-CCgguggUCGGCGACCGGCUCGu -3'
miRNA:   3'- gaguAGcGGa----AGUCGCUGGUCGAGUu -5'
31890 5' -54.9 NC_006938.1 + 38728 0.68 0.624587
Target:  5'- cCUCAccUGCCagagCGGCGGCCAGgUCAu -3'
miRNA:   3'- -GAGUa-GCGGaa--GUCGCUGGUCgAGUu -5'
31890 5' -54.9 NC_006938.1 + 60371 0.68 0.602346
Target:  5'- ---uUCGUC-UCAGUGGCCAGCUgGAc -3'
miRNA:   3'- gaguAGCGGaAGUCGCUGGUCGAgUU- -5'
31890 5' -54.9 NC_006938.1 + 6467 0.68 0.580208
Target:  5'- aCUgAUCGCCUUCuggacgaacGCGGaguCCGGCUCGu -3'
miRNA:   3'- -GAgUAGCGGAAGu--------CGCU---GGUCGAGUu -5'
31890 5' -54.9 NC_006938.1 + 8193 0.69 0.569202
Target:  5'- -aCAUCGCacgUCgAGcCGACCAGCUUAu -3'
miRNA:   3'- gaGUAGCGga-AG-UC-GCUGGUCGAGUu -5'
31890 5' -54.9 NC_006938.1 + 62582 0.69 0.569202
Target:  5'- uCUCAUCGUCccgacCAGUGGCCuGCUCc- -3'
miRNA:   3'- -GAGUAGCGGaa---GUCGCUGGuCGAGuu -5'
31890 5' -54.9 NC_006938.1 + 32027 0.71 0.443235
Target:  5'- ----cCGCCUUCuugAGCG-CCAGCUCGAg -3'
miRNA:   3'- gaguaGCGGAAG---UCGCuGGUCGAGUU- -5'
31890 5' -54.9 NC_006938.1 + 21927 0.73 0.342791
Target:  5'- -aCGUCGUCUgggaucucgCAGCGaACCAGCUCGc -3'
miRNA:   3'- gaGUAGCGGAa--------GUCGC-UGGUCGAGUu -5'
31890 5' -54.9 NC_006938.1 + 51250 1.06 0.00175
Target:  5'- gCUCAUCGCCUUCAGCGACCAGCUCAAc -3'
miRNA:   3'- -GAGUAGCGGAAGUCGCUGGUCGAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.