Results 21 - 36 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31891 | 3' | -52.4 | NC_006938.1 | + | 38997 | 0.66 | 0.890219 |
Target: 5'- cGGUGCGgaggugaUUGUCGAcGAUgGCAugccgaauggcacuGCCGCu -3' miRNA: 3'- -CCGCGCa------AGUAGCU-CUAgCGU--------------UGGCG- -5' |
|||||||
31891 | 3' | -52.4 | NC_006938.1 | + | 39664 | 0.68 | 0.818075 |
Target: 5'- cGGCGaCG-UCGUcCGAGAagUCGaCGGCCGa -3' miRNA: 3'- -CCGC-GCaAGUA-GCUCU--AGC-GUUGGCg -5' |
|||||||
31891 | 3' | -52.4 | NC_006938.1 | + | 40122 | 0.67 | 0.869746 |
Target: 5'- aGCGCcggUCAgcCGGGuGUCGCGGCCGa -3' miRNA: 3'- cCGCGca-AGUa-GCUC-UAGCGUUGGCg -5' |
|||||||
31891 | 3' | -52.4 | NC_006938.1 | + | 41035 | 0.67 | 0.853421 |
Target: 5'- aGGCGUcgcuGUUCGcgucUCGGGAgCGCAcUCGCc -3' miRNA: 3'- -CCGCG----CAAGU----AGCUCUaGCGUuGGCG- -5' |
|||||||
31891 | 3' | -52.4 | NC_006938.1 | + | 44035 | 0.68 | 0.818075 |
Target: 5'- cGGCGgGa--AUgGAGGUgGCAACCGg -3' miRNA: 3'- -CCGCgCaagUAgCUCUAgCGUUGGCg -5' |
|||||||
31891 | 3' | -52.4 | NC_006938.1 | + | 46785 | 0.7 | 0.728237 |
Target: 5'- uGGCGCaucgagaUgGUCGAGAUCcuGCAGCCcGCc -3' miRNA: 3'- -CCGCGca-----AgUAGCUCUAG--CGUUGG-CG- -5' |
|||||||
31891 | 3' | -52.4 | NC_006938.1 | + | 48238 | 0.66 | 0.906164 |
Target: 5'- uGGCGCcaucgUCAaCGAGuUCGCAcucaacAUCGCu -3' miRNA: 3'- -CCGCGca---AGUaGCUCuAGCGU------UGGCG- -5' |
|||||||
31891 | 3' | -52.4 | NC_006938.1 | + | 49308 | 0.72 | 0.597767 |
Target: 5'- cGGCGCGgaacuucUCGUUGuGGAUgGCGGCCuGCu -3' miRNA: 3'- -CCGCGCa------AGUAGC-UCUAgCGUUGG-CG- -5' |
|||||||
31891 | 3' | -52.4 | NC_006938.1 | + | 50901 | 0.66 | 0.906164 |
Target: 5'- aGGCuGCGagCAaUGAcGUCuGCGACCGCu -3' miRNA: 3'- -CCG-CGCaaGUaGCUcUAG-CGUUGGCG- -5' |
|||||||
31891 | 3' | -52.4 | NC_006938.1 | + | 51244 | 0.74 | 0.511947 |
Target: 5'- cGCGCGgaacgCGAcGAUCGCGGCCGg -3' miRNA: 3'- cCGCGCaaguaGCU-CUAGCGUUGGCg -5' |
|||||||
31891 | 3' | -52.4 | NC_006938.1 | + | 51286 | 0.74 | 0.470927 |
Target: 5'- uGGCGCGUUCcgCcAGcUCGCcacGACCGUg -3' miRNA: 3'- -CCGCGCAAGuaGcUCuAGCG---UUGGCG- -5' |
|||||||
31891 | 3' | -52.4 | NC_006938.1 | + | 51490 | 0.66 | 0.912653 |
Target: 5'- cGGgGCa---GUCGAGGcgaUCGUcGCCGCg -3' miRNA: 3'- -CCgCGcaagUAGCUCU---AGCGuUGGCG- -5' |
|||||||
31891 | 3' | -52.4 | NC_006938.1 | + | 51532 | 1.14 | 0.001283 |
Target: 5'- cGGCGCGUUCAUCGAGAUCGCAACCGCc -3' miRNA: 3'- -CCGCGCAAGUAGCUCUAGCGUUGGCG- -5' |
|||||||
31891 | 3' | -52.4 | NC_006938.1 | + | 59036 | 0.68 | 0.830831 |
Target: 5'- -cCGCGUUCGuguugucgauggucuUCGuGAUCGUcgcagugauGGCCGCg -3' miRNA: 3'- ccGCGCAAGU---------------AGCuCUAGCG---------UUGGCG- -5' |
|||||||
31891 | 3' | -52.4 | NC_006938.1 | + | 60841 | 0.67 | 0.861703 |
Target: 5'- uGGCGuCGgaaucacaaaCGUCGAGAUgGUucaGACCGUg -3' miRNA: 3'- -CCGC-GCaa--------GUAGCUCUAgCG---UUGGCG- -5' |
|||||||
31891 | 3' | -52.4 | NC_006938.1 | + | 63406 | 0.68 | 0.836175 |
Target: 5'- aGGUGCcgcgaGUUCAUCGucuuGGagGC-ACCGCg -3' miRNA: 3'- -CCGCG-----CAAGUAGCu---CUagCGuUGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home