miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31891 3' -52.4 NC_006938.1 + 9434 0.66 0.912653
Target:  5'- cGGCacccUGUUCAUCGAccaGAUC--AACCGCa -3'
miRNA:   3'- -CCGc---GCAAGUAGCU---CUAGcgUUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 12789 0.67 0.861703
Target:  5'- gGGUcCGUUCAUggcguaCGAGGUCGUcacgGACCuGCg -3'
miRNA:   3'- -CCGcGCAAGUA------GCUCUAGCG----UUGG-CG- -5'
31891 3' -52.4 NC_006938.1 + 60841 0.67 0.861703
Target:  5'- uGGCGuCGgaaucacaaaCGUCGAGAUgGUucaGACCGUg -3'
miRNA:   3'- -CCGC-GCaa--------GUAGCUCUAgCG---UUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 4303 0.67 0.869746
Target:  5'- aGCGCGUccacaccuUCAagGAGAacccgCGCcuggaGACCGCg -3'
miRNA:   3'- cCGCGCA--------AGUagCUCUa----GCG-----UUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 40122 0.67 0.869746
Target:  5'- aGCGCcggUCAgcCGGGuGUCGCGGCCGa -3'
miRNA:   3'- cCGCGca-AGUa-GCUC-UAGCGUUGGCg -5'
31891 3' -52.4 NC_006938.1 + 18921 0.66 0.88509
Target:  5'- cGCGgGUUCAucaccacgcugcUCGGccGUCGCuGCCGCu -3'
miRNA:   3'- cCGCgCAAGU------------AGCUc-UAGCGuUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 38997 0.66 0.890219
Target:  5'- cGGUGCGgaggugaUUGUCGAcGAUgGCAugccgaauggcacuGCCGCu -3'
miRNA:   3'- -CCGCGCa------AGUAGCU-CUAgCGU--------------UGGCG- -5'
31891 3' -52.4 NC_006938.1 + 24893 0.66 0.899405
Target:  5'- uGGagaGCGgcugcCAUCGGuGUCGUGAUCGCg -3'
miRNA:   3'- -CCg--CGCaa---GUAGCUcUAGCGUUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 48238 0.66 0.906164
Target:  5'- uGGCGCcaucgUCAaCGAGuUCGCAcucaacAUCGCu -3'
miRNA:   3'- -CCGCGca---AGUaGCUCuAGCGU------UGGCG- -5'
31891 3' -52.4 NC_006938.1 + 41035 0.67 0.853421
Target:  5'- aGGCGUcgcuGUUCGcgucUCGGGAgCGCAcUCGCc -3'
miRNA:   3'- -CCGCG----CAAGU----AGCUCUaGCGUuGGCG- -5'
31891 3' -52.4 NC_006938.1 + 15653 0.68 0.827227
Target:  5'- aGCGCGgucggCGUCGAGGucggUCGguACUGg -3'
miRNA:   3'- cCGCGCaa---GUAGCUCU----AGCguUGGCg -5'
31891 3' -52.4 NC_006938.1 + 13403 0.68 0.827227
Target:  5'- cGCGCGUUCAUacAGGaCGCcACCGa -3'
miRNA:   3'- cCGCGCAAGUAgcUCUaGCGuUGGCg -5'
31891 3' -52.4 NC_006938.1 + 51286 0.74 0.470927
Target:  5'- uGGCGCGUUCcgCcAGcUCGCcacGACCGUg -3'
miRNA:   3'- -CCGCGCAAGuaGcUCuAGCG---UUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 35915 0.72 0.619673
Target:  5'- aGGCGCG-UCAUCG-GAccguUCGCcAgCGCg -3'
miRNA:   3'- -CCGCGCaAGUAGCuCU----AGCGuUgGCG- -5'
31891 3' -52.4 NC_006938.1 + 32921 0.71 0.641623
Target:  5'- aGCGC-UUCAUcaucCGAGGUCGUggaagcucGACCGCu -3'
miRNA:   3'- cCGCGcAAGUA----GCUCUAGCG--------UUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 18820 0.7 0.717627
Target:  5'- uGGuCGCGggCGaCGAGGgcgCGCGGCUGUu -3'
miRNA:   3'- -CC-GCGCaaGUaGCUCUa--GCGUUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 46785 0.7 0.728237
Target:  5'- uGGCGCaucgagaUgGUCGAGAUCcuGCAGCCcGCc -3'
miRNA:   3'- -CCGCGca-----AgUAGCUCUAG--CGUUGG-CG- -5'
31891 3' -52.4 NC_006938.1 + 2851 0.68 0.798236
Target:  5'- cGGCaaGCGgaccaUCAUaacgcucCGAGGUCGCGACUGg -3'
miRNA:   3'- -CCG--CGCa----AGUA-------GCUCUAGCGUUGGCg -5'
31891 3' -52.4 NC_006938.1 + 44035 0.68 0.818075
Target:  5'- cGGCGgGa--AUgGAGGUgGCAACCGg -3'
miRNA:   3'- -CCGCgCaagUAgCUCUAgCGUUGGCg -5'
31891 3' -52.4 NC_006938.1 + 8096 0.68 0.827227
Target:  5'- ------aUCAUCGAGAUgGCGACcCGCg -3'
miRNA:   3'- ccgcgcaAGUAGCUCUAgCGUUG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.