miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31892 5' -55.7 NC_006938.1 + 31181 0.66 0.761501
Target:  5'- aUCGGaGCCCaAGAGaGGACGGG--ACCu -3'
miRNA:   3'- -AGCUaCGGG-UCUCcCCUGUCUagUGG- -5'
31892 5' -55.7 NC_006938.1 + 21778 0.66 0.761501
Target:  5'- gUCGucuauCUCAGAGagccGGGGCAGGUUGCCc -3'
miRNA:   3'- -AGCuac--GGGUCUC----CCCUGUCUAGUGG- -5'
31892 5' -55.7 NC_006938.1 + 21500 0.66 0.751375
Target:  5'- cUCGAagucgGCCCAcgccuccuccGAGGGG-CuuGUCACCc -3'
miRNA:   3'- -AGCUa----CGGGU----------CUCCCCuGucUAGUGG- -5'
31892 5' -55.7 NC_006938.1 + 19554 0.66 0.741132
Target:  5'- gCGuGUGCCUcgcGGAcGGGGAgaugguggAGAUCACCg -3'
miRNA:   3'- aGC-UACGGG---UCU-CCCCUg-------UCUAGUGG- -5'
31892 5' -55.7 NC_006938.1 + 34142 0.66 0.730782
Target:  5'- aUCGuggugcucgGCCCGGAGGccuGGACccgcuGGUCGCUc -3'
miRNA:   3'- -AGCua-------CGGGUCUCC---CCUGu----CUAGUGG- -5'
31892 5' -55.7 NC_006938.1 + 30331 0.66 0.729742
Target:  5'- cCGAUGagguaCCAGuggaGGaGGGACAGucccaucAUCGCCg -3'
miRNA:   3'- aGCUACg----GGUC----UC-CCCUGUC-------UAGUGG- -5'
31892 5' -55.7 NC_006938.1 + 18354 0.66 0.709807
Target:  5'- -gGcgGCCCAG-GGcGGCGG-UCACCu -3'
miRNA:   3'- agCuaCGGGUCuCCcCUGUCuAGUGG- -5'
31892 5' -55.7 NC_006938.1 + 22310 0.67 0.699203
Target:  5'- gCGGUGCCUcgccGGAGGGG-CuGAagACUa -3'
miRNA:   3'- aGCUACGGG----UCUCCCCuGuCUagUGG- -5'
31892 5' -55.7 NC_006938.1 + 23754 0.67 0.699203
Target:  5'- cCGu--CCCGGAGGGucaGACGGAggGCCg -3'
miRNA:   3'- aGCuacGGGUCUCCC---CUGUCUagUGG- -5'
31892 5' -55.7 NC_006938.1 + 51476 0.67 0.688536
Target:  5'- gUCGcgG-CCGGAGccGGGGCAGucgaggcgaucGUCGCCg -3'
miRNA:   3'- -AGCuaCgGGUCUC--CCCUGUC-----------UAGUGG- -5'
31892 5' -55.7 NC_006938.1 + 55618 0.67 0.677817
Target:  5'- gUCGAcGCCgAGAc-GGAgAGGUCGCCg -3'
miRNA:   3'- -AGCUaCGGgUCUccCCUgUCUAGUGG- -5'
31892 5' -55.7 NC_006938.1 + 2781 0.67 0.677817
Target:  5'- aCGAgcGCCCGGc-GGGACAGGUUGgCg -3'
miRNA:   3'- aGCUa-CGGGUCucCCCUGUCUAGUgG- -5'
31892 5' -55.7 NC_006938.1 + 28954 0.67 0.656263
Target:  5'- cUCGAggccgcugGCCUGGGcGGGACAGA--GCCg -3'
miRNA:   3'- -AGCUa-------CGGGUCUcCCCUGUCUagUGG- -5'
31892 5' -55.7 NC_006938.1 + 51759 0.68 0.645449
Target:  5'- gCGGaGCCCAGAGaGGGcgucAguGAUCcCCg -3'
miRNA:   3'- aGCUaCGGGUCUC-CCC----UguCUAGuGG- -5'
31892 5' -55.7 NC_006938.1 + 22943 0.68 0.645449
Target:  5'- aCGAUGCCCA-AGuGGGGCAGugguggauggCACg -3'
miRNA:   3'- aGCUACGGGUcUC-CCCUGUCua--------GUGg -5'
31892 5' -55.7 NC_006938.1 + 62332 0.68 0.602167
Target:  5'- aCGAgaGCCCAaacAGGGcGACGG-UCACCu -3'
miRNA:   3'- aGCUa-CGGGUc--UCCC-CUGUCuAGUGG- -5'
31892 5' -55.7 NC_006938.1 + 28048 0.68 0.602167
Target:  5'- uUCGAUGCCa--AGGGcGACAGcaaGCCg -3'
miRNA:   3'- -AGCUACGGgucUCCC-CUGUCuagUGG- -5'
31892 5' -55.7 NC_006938.1 + 6119 0.69 0.58064
Target:  5'- cUUGGuUGCUgGGuGGGGcUAGAUCGCCc -3'
miRNA:   3'- -AGCU-ACGGgUCuCCCCuGUCUAGUGG- -5'
31892 5' -55.7 NC_006938.1 + 27732 0.69 0.538141
Target:  5'- -gGGUGUCCaAGAGGGGuuc-GUCACCu -3'
miRNA:   3'- agCUACGGG-UCUCCCCugucUAGUGG- -5'
31892 5' -55.7 NC_006938.1 + 23991 0.7 0.517285
Target:  5'- aCGGUGCCUGGuucgacGaGGACGGcAUCACCa -3'
miRNA:   3'- aGCUACGGGUCuc----C-CCUGUC-UAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.