miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31893 3' -58.1 NC_006938.1 + 20091 0.66 0.615959
Target:  5'- uGCUGUgaGGAUGGCGUucGGcuccGCGUGGAc -3'
miRNA:   3'- cCGACGg-UCUGCUGCA--CCu---CGCACCU- -5'
31893 3' -58.1 NC_006938.1 + 51967 0.66 0.612769
Target:  5'- -uCUGCCGcGAagGACGUGGAGgaccucgcagagacCGUGGAc -3'
miRNA:   3'- ccGACGGU-CUg-CUGCACCUC--------------GCACCU- -5'
31893 3' -58.1 NC_006938.1 + 5596 0.66 0.605329
Target:  5'- uGCUGCCAG-CGGCGggUGGcGCGUccuGGu -3'
miRNA:   3'- cCGACGGUCuGCUGC--ACCuCGCA---CCu -5'
31893 3' -58.1 NC_006938.1 + 16254 0.66 0.59472
Target:  5'- aGGCcauCCAGuggcACGACGUgccGGAGCGcUGGGu -3'
miRNA:   3'- -CCGac-GGUC----UGCUGCA---CCUCGC-ACCU- -5'
31893 3' -58.1 NC_006938.1 + 41400 0.67 0.5736
Target:  5'- gGGCUcgucgGCCuGugGGuCGUGGAGCucGGAc -3'
miRNA:   3'- -CCGA-----CGGuCugCU-GCACCUCGcaCCU- -5'
31893 3' -58.1 NC_006938.1 + 5039 0.67 0.5736
Target:  5'- gGGUUGCCaaugcAGAUGAUGUGGucGuCGUcGGAg -3'
miRNA:   3'- -CCGACGG-----UCUGCUGCACCu-C-GCA-CCU- -5'
31893 3' -58.1 NC_006938.1 + 55359 0.68 0.511534
Target:  5'- uGC-GCCGGGUGGCGUGG-GCGUGa- -3'
miRNA:   3'- cCGaCGGUCUGCUGCACCuCGCACcu -5'
31893 3' -58.1 NC_006938.1 + 34706 0.68 0.501446
Target:  5'- aGCUGCUGGACucCGUguccagGGAGCG-GGAg -3'
miRNA:   3'- cCGACGGUCUGcuGCA------CCUCGCaCCU- -5'
31893 3' -58.1 NC_006938.1 + 10104 0.68 0.48154
Target:  5'- cGGUgcacaUGCCGGACGGUGUucgcacGGAGCGggUGGAc -3'
miRNA:   3'- -CCG-----ACGGUCUGCUGCA------CCUCGC--ACCU- -5'
31893 3' -58.1 NC_006938.1 + 41848 0.69 0.452426
Target:  5'- aGGCUGCU--GCGACGcGGugauuuGCGUGGc -3'
miRNA:   3'- -CCGACGGucUGCUGCaCCu-----CGCACCu -5'
31893 3' -58.1 NC_006938.1 + 52216 0.71 0.346578
Target:  5'- uGGCUGCCAGcugggucagguCGGCcagcagGGAGCGUGuGAa -3'
miRNA:   3'- -CCGACGGUCu----------GCUGca----CCUCGCAC-CU- -5'
31893 3' -58.1 NC_006938.1 + 21628 0.71 0.330749
Target:  5'- cGCUGCUGGACGGCGgugaccagGGcGaCGUGGGc -3'
miRNA:   3'- cCGACGGUCUGCUGCa-------CCuC-GCACCU- -5'
31893 3' -58.1 NC_006938.1 + 52575 1.11 0.000501
Target:  5'- aGGCUGCCAGACGACGUGGAGCGUGGAg -3'
miRNA:   3'- -CCGACGGUCUGCUGCACCUCGCACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.