miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31893 5' -56.4 NC_006938.1 + 21214 0.66 0.699203
Target:  5'- uGGCCCGCGCg---GGACuccaGCCaGUCGg -3'
miRNA:   3'- -CCGGGCGCGaaguUCUGc---UGG-CAGUa -5'
31893 5' -56.4 NC_006938.1 + 4470 0.66 0.699203
Target:  5'- uGUCgCGCGUgaaUCGacaccAGACGACCGUCu- -3'
miRNA:   3'- cCGG-GCGCGa--AGU-----UCUGCUGGCAGua -5'
31893 5' -56.4 NC_006938.1 + 50083 0.66 0.699203
Target:  5'- aGGuCCCGCcaacGC-UCAGGccGCGAUCGUCGc -3'
miRNA:   3'- -CC-GGGCG----CGaAGUUC--UGCUGGCAGUa -5'
31893 5' -56.4 NC_006938.1 + 4874 0.66 0.694943
Target:  5'- uGCCCGUGCUgccugugUCucGGCGAcugaaccgcguacaCCGUCAUu -3'
miRNA:   3'- cCGGGCGCGA-------AGuuCUGCU--------------GGCAGUA- -5'
31893 5' -56.4 NC_006938.1 + 52363 0.66 0.688536
Target:  5'- cGGCCCGUggcacgggucaGCcgaggCGAGACGAUcgaCGUCAa -3'
miRNA:   3'- -CCGGGCG-----------CGaa---GUUCUGCUG---GCAGUa -5'
31893 5' -56.4 NC_006938.1 + 46422 0.66 0.667056
Target:  5'- cGGCCCGaGCUUCucGGACguGACCGcCc- -3'
miRNA:   3'- -CCGGGCgCGAAGu-UCUG--CUGGCaGua -5'
31893 5' -56.4 NC_006938.1 + 51323 0.67 0.656263
Target:  5'- aGGCgaugaGCGC--CGAGAUGGCCGUCGc -3'
miRNA:   3'- -CCGgg---CGCGaaGUUCUGCUGGCAGUa -5'
31893 5' -56.4 NC_006938.1 + 62436 0.67 0.645449
Target:  5'- aGGCCC-CGUUg-AAGGUGACCGUCGc -3'
miRNA:   3'- -CCGGGcGCGAagUUCUGCUGGCAGUa -5'
31893 5' -56.4 NC_006938.1 + 32915 0.67 0.642202
Target:  5'- uGGUCCaGCGCUUCAucauccgaggucguGGAagcuCGACCGcUCGUu -3'
miRNA:   3'- -CCGGG-CGCGAAGU--------------UCU----GCUGGC-AGUA- -5'
31893 5' -56.4 NC_006938.1 + 22402 0.67 0.634623
Target:  5'- -cCCCGCGacccagagCGAGACGGCCcugGUCAUg -3'
miRNA:   3'- ccGGGCGCgaa-----GUUCUGCUGG---CAGUA- -5'
31893 5' -56.4 NC_006938.1 + 30531 0.67 0.6173
Target:  5'- aGGCCaUGCGCaacggCAAGACGGCgaacaugggcgauguCGUCAUc -3'
miRNA:   3'- -CCGG-GCGCGaa---GUUCUGCUG---------------GCAGUA- -5'
31893 5' -56.4 NC_006938.1 + 22614 0.68 0.569934
Target:  5'- aGGCCa-CGCUg-AAGAUGAUCGUCAc -3'
miRNA:   3'- -CCGGgcGCGAagUUCUGCUGGCAGUa -5'
31893 5' -56.4 NC_006938.1 + 35340 0.71 0.409548
Target:  5'- cGGCCUGUGCgaggUCAugaAGACGAUCuUCAUc -3'
miRNA:   3'- -CCGGGCGCGa---AGU---UCUGCUGGcAGUA- -5'
31893 5' -56.4 NC_006938.1 + 51487 0.73 0.324645
Target:  5'- aGCCgGgGCagUCGAGGCGAUCGUCGc -3'
miRNA:   3'- cCGGgCgCGa-AGUUCUGCUGGCAGUa -5'
31893 5' -56.4 NC_006938.1 + 37904 0.73 0.294548
Target:  5'- uGGCCCGCGUcUCAGGGCGGCg----- -3'
miRNA:   3'- -CCGGGCGCGaAGUUCUGCUGgcagua -5'
31893 5' -56.4 NC_006938.1 + 52610 1.07 0.001298
Target:  5'- uGGCCCGCGCUUCAAGACGACCGUCAUc -3'
miRNA:   3'- -CCGGGCGCGAAGUUCUGCUGGCAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.