miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31895 5' -61.6 NC_006938.1 + 9428 0.66 0.437107
Target:  5'- cGAGCC-C-GGCACCCUGuuCAUCGAc -3'
miRNA:   3'- cCUCGGuGaCCGUGGGACccGUGGCU- -5'
31895 5' -61.6 NC_006938.1 + 50144 0.66 0.427947
Target:  5'- uGGAGCCACccGCGCC--GGGCACaaaGGc -3'
miRNA:   3'- -CCUCGGUGacCGUGGgaCCCGUGg--CU- -5'
31895 5' -61.6 NC_006938.1 + 15044 0.66 0.418903
Target:  5'- gGGAGCCGggaugUUGaGCGCCUUGacaaauGGCGCCa- -3'
miRNA:   3'- -CCUCGGU-----GAC-CGUGGGAC------CCGUGGcu -5'
31895 5' -61.6 NC_006938.1 + 60449 0.66 0.409974
Target:  5'- -uGGCCacugagacgaACUGGUugCCUGcagaGGCGCUGAg -3'
miRNA:   3'- ccUCGG----------UGACCGugGGAC----CCGUGGCU- -5'
31895 5' -61.6 NC_006938.1 + 55415 0.66 0.401166
Target:  5'- --cGCCGCaGGCGgCCUGGGCuucucGCCc- -3'
miRNA:   3'- ccuCGGUGaCCGUgGGACCCG-----UGGcu -5'
31895 5' -61.6 NC_006938.1 + 28145 0.67 0.383915
Target:  5'- uGGGCCagcggcuuGCUGuCGCCCUuGGCAUCGAa -3'
miRNA:   3'- cCUCGG--------UGACcGUGGGAcCCGUGGCU- -5'
31895 5' -61.6 NC_006938.1 + 51838 0.67 0.383915
Target:  5'- cGAGCCuCUcGGUGaucugucccCUCUGGGCAUCGAa -3'
miRNA:   3'- cCUCGGuGA-CCGU---------GGGACCCGUGGCU- -5'
31895 5' -61.6 NC_006938.1 + 22580 0.67 0.383065
Target:  5'- aGGAGCUcucgaaguAgUGGCgugggaagaaagaGCCCaGGGUGCCGAc -3'
miRNA:   3'- -CCUCGG--------UgACCG-------------UGGGaCCCGUGGCU- -5'
31895 5' -61.6 NC_006938.1 + 3307 0.67 0.375476
Target:  5'- cGAGCCAucuuCUGGgAgCa-GGGCACCGGc -3'
miRNA:   3'- cCUCGGU----GACCgUgGgaCCCGUGGCU- -5'
31895 5' -61.6 NC_006938.1 + 39615 0.67 0.358978
Target:  5'- cGuGCCACcgaacuUGGCAaCCUGGGCguccagccacgcACCGAg -3'
miRNA:   3'- cCuCGGUG------ACCGUgGGACCCG------------UGGCU- -5'
31895 5' -61.6 NC_006938.1 + 17640 0.67 0.356547
Target:  5'- cGGAGCCAaccucggcuacgacCUGGaCugggccuggGCCgaGGGCAUCGAc -3'
miRNA:   3'- -CCUCGGU--------------GACC-G---------UGGgaCCCGUGGCU- -5'
31895 5' -61.6 NC_006938.1 + 15810 0.68 0.342994
Target:  5'- uGGAGCagccagagaGCUGGCAgaCCUGGG-ACCa- -3'
miRNA:   3'- -CCUCGg--------UGACCGUg-GGACCCgUGGcu -5'
31895 5' -61.6 NC_006938.1 + 38060 0.68 0.327529
Target:  5'- -aGGCCGCUGGCACCaCUGucgguGGCAa-GAa -3'
miRNA:   3'- ccUCGGUGACCGUGG-GAC-----CCGUggCU- -5'
31895 5' -61.6 NC_006938.1 + 56497 0.68 0.305311
Target:  5'- cGGGGUCACUGGauuucaaaCugCCUGGGacaGgCGAg -3'
miRNA:   3'- -CCUCGGUGACC--------GugGGACCCg--UgGCU- -5'
31895 5' -61.6 NC_006938.1 + 20113 0.68 0.298166
Target:  5'- --cGCCGCgUGGUcUCCUGGGCcuCCGAc -3'
miRNA:   3'- ccuCGGUG-ACCGuGGGACCCGu-GGCU- -5'
31895 5' -61.6 NC_006938.1 + 8466 0.68 0.298166
Target:  5'- cGGAGCCggACUGGCACga---GCGCCGAg -3'
miRNA:   3'- -CCUCGG--UGACCGUGggaccCGUGGCU- -5'
31895 5' -61.6 NC_006938.1 + 8622 0.7 0.233779
Target:  5'- uGGucCCACUGGCuGCCCUGGGacUugUGAc -3'
miRNA:   3'- -CCucGGUGACCG-UGGGACCC--GugGCU- -5'
31895 5' -61.6 NC_006938.1 + 61912 0.71 0.203093
Target:  5'- uGGAGaCCGacGGCACCCUGGGCuucuuuacguuugacACCa- -3'
miRNA:   3'- -CCUC-GGUgaCCGUGGGACCCG---------------UGGcu -5'
31895 5' -61.6 NC_006938.1 + 18256 0.71 0.20104
Target:  5'- aGGGCCACUGcgaggugaccGcCGCCCUGGGcCGCCu- -3'
miRNA:   3'- cCUCGGUGAC----------C-GUGGGACCC-GUGGcu -5'
31895 5' -61.6 NC_006938.1 + 47002 0.72 0.167952
Target:  5'- --cGCCACacgggUGGCaacgacgcuGCCCUGGGCgGCCGAa -3'
miRNA:   3'- ccuCGGUG-----ACCG---------UGGGACCCG-UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.