Results 81 - 100 of 133 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 13012 | 0.69 | 0.518484 |
Target: 5'- gUGCGAuuagagaUGCCaaagaGGCGAUcaguGACCUCUGCCa -3' miRNA: 3'- aGCGCU-------GCGG-----UCGUUG----UUGGAGGCGG- -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 57440 | 0.69 | 0.519511 |
Target: 5'- cCGUGGCuCCGGCAuagucGCcccauGCCUCgGCCa -3' miRNA: 3'- aGCGCUGcGGUCGU-----UGu----UGGAGgCGG- -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 51973 | 0.69 | 0.519511 |
Target: 5'- cUCcCGACGgaAGCcaaaGGCCUCCGCCa -3' miRNA: 3'- -AGcGCUGCggUCGuug-UUGGAGGCGG- -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 19903 | 0.69 | 0.49912 |
Target: 5'- cCGCGugGUUGGCAugggauacaACGGCUUCC-CCg -3' miRNA: 3'- aGCGCugCGGUCGU---------UGUUGGAGGcGG- -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 60689 | 0.69 | 0.49912 |
Target: 5'- -gGCGGCccGCCAGUcGCGACCUCggaGCg -3' miRNA: 3'- agCGCUG--CGGUCGuUGUUGGAGg--CGg -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 9329 | 0.69 | 0.49912 |
Target: 5'- aCGaCGAUGUCAGUucCAACCUgCGUCc -3' miRNA: 3'- aGC-GCUGCGGUCGuuGUUGGAgGCGG- -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 21699 | 0.69 | 0.489058 |
Target: 5'- gCGUGACuGUgAGCGACGGCaaCUCCaGCCc -3' miRNA: 3'- aGCGCUG-CGgUCGUUGUUG--GAGG-CGG- -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 16163 | 0.69 | 0.52054 |
Target: 5'- aCGCGGCGCuacgacgucgcaCAGCAcuccuggaacaugcuCAACCUCgCGCUg -3' miRNA: 3'- aGCGCUGCG------------GUCGUu--------------GUUGGAG-GCGG- -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 51288 | 0.69 | 0.519511 |
Target: 5'- gCGCGuucCGCCAGCucgccACGACCgugCagGCCg -3' miRNA: 3'- aGCGCu--GCGGUCGu----UGUUGGa--Gg-CGG- -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 1720 | 0.69 | 0.519511 |
Target: 5'- gCGaCGACGCCAugGACAGCUcCgGCCg -3' miRNA: 3'- aGC-GCUGCGGUcgUUGUUGGaGgCGG- -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 562 | 0.69 | 0.518484 |
Target: 5'- aCGCGAUcgacaugugggagGCCGGUgccGAgAGgCUCCGCCu -3' miRNA: 3'- aGCGCUG-------------CGGUCG---UUgUUgGAGGCGG- -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 41115 | 0.69 | 0.49912 |
Target: 5'- gUCGgGGCcucuGCCAucGCAACGACCauccCCGCUg -3' miRNA: 3'- -AGCgCUG----CGGU--CGUUGUUGGa---GGCGG- -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 38544 | 0.69 | 0.489058 |
Target: 5'- aCGCcGCGaUCGGCAACGACUcgaCGCCg -3' miRNA: 3'- aGCGcUGC-GGUCGUUGUUGGag-GCGG- -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 9010 | 0.69 | 0.489058 |
Target: 5'- -aGCG-CGCCaAGCAG--GCCgCCGCCa -3' miRNA: 3'- agCGCuGCGG-UCGUUguUGGaGGCGG- -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 53704 | 0.69 | 0.479092 |
Target: 5'- cCGCGuACGCCcuGGaGACgAACCUCCGUg -3' miRNA: 3'- aGCGC-UGCGG--UCgUUG-UUGGAGGCGg -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 45438 | 0.69 | 0.469227 |
Target: 5'- cUGCGAUGCCAuaGACG-CCUUCGUg -3' miRNA: 3'- aGCGCUGCGGUcgUUGUuGGAGGCGg -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 51015 | 0.69 | 0.469227 |
Target: 5'- gCGCguucGACGCU-GCcACcggGGCCUCCGCCg -3' miRNA: 3'- aGCG----CUGCGGuCGuUG---UUGGAGGCGG- -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 27902 | 0.69 | 0.479092 |
Target: 5'- -gGCGACGgaCAGCAucu-CCUCgCGCCa -3' miRNA: 3'- agCGCUGCg-GUCGUuguuGGAG-GCGG- -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 14843 | 0.69 | 0.479092 |
Target: 5'- cUUGCGA-GCCAGCGu--GCCaUCGCCa -3' miRNA: 3'- -AGCGCUgCGGUCGUuguUGGaGGCGG- -5' |
|||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 28590 | 0.7 | 0.440277 |
Target: 5'- uUCGCGcucuaucaGCaGGCGAuCGACCUCCGUCu -3' miRNA: 3'- -AGCGCug------CGgUCGUU-GUUGGAGGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home