miRNA display CGI


Results 81 - 100 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 30426 0.67 0.593067
Target:  5'- cUCGCGuAUGCCcuuGGCGAUGuCgaCCGCCa -3'
miRNA:   3'- -AGCGC-UGCGG---UCGUUGUuGgaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 47434 0.67 0.603761
Target:  5'- -gGUGugG-CAGCGGuCGACCcagCCGCCc -3'
miRNA:   3'- agCGCugCgGUCGUU-GUUGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 4766 0.67 0.603761
Target:  5'- aUCGUGACGCgauuGGUGAau-CCUCgGCCa -3'
miRNA:   3'- -AGCGCUGCGg---UCGUUguuGGAGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 16792 0.67 0.614478
Target:  5'- cUCGauGCGCCAGCGGgAGCCgUCUGaCUc -3'
miRNA:   3'- -AGCgcUGCGGUCGUUgUUGG-AGGC-GG- -5'
31897 3' -56.9 NC_006938.1 + 26032 0.67 0.614478
Target:  5'- -gGCGGCcucguccagcuuGCCAGCGgcgGCGGCCUCgaGCUc -3'
miRNA:   3'- agCGCUG------------CGGUCGU---UGUUGGAGg-CGG- -5'
31897 3' -56.9 NC_006938.1 + 40069 0.67 0.614478
Target:  5'- cUGgGcCGCCuucuGCAGCu-CCUCUGCCc -3'
miRNA:   3'- aGCgCuGCGGu---CGUUGuuGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 24300 0.67 0.635948
Target:  5'- gUCGCGGCGUUGGacgGACcACCgUuuGCCg -3'
miRNA:   3'- -AGCGCUGCGGUCg--UUGuUGG-AggCGG- -5'
31897 3' -56.9 NC_006938.1 + 51111 0.67 0.635948
Target:  5'- aUCGUGGCGaUCAGCAcGCGGCggUCGUCa -3'
miRNA:   3'- -AGCGCUGC-GGUCGU-UGUUGgaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 10039 0.67 0.614478
Target:  5'- cUCGCuGACGgCGGaCAACGuguCCUCUGgCa -3'
miRNA:   3'- -AGCG-CUGCgGUC-GUUGUu--GGAGGCgG- -5'
31897 3' -56.9 NC_006938.1 + 61471 0.67 0.614478
Target:  5'- -aGCGGCaaCGGCAACggUCUCgGCg -3'
miRNA:   3'- agCGCUGcgGUCGUUGuuGGAGgCGg -5'
31897 3' -56.9 NC_006938.1 + 19498 0.67 0.614478
Target:  5'- -aGUGACuCacacaGGCGACGACCU-CGCCa -3'
miRNA:   3'- agCGCUGcGg----UCGUUGUUGGAgGCGG- -5'
31897 3' -56.9 NC_006938.1 + 38034 0.67 0.603761
Target:  5'- aCGCGAgcaCGCCgAGCgGAUGGCCaaggCCGCUg -3'
miRNA:   3'- aGCGCU---GCGG-UCG-UUGUUGGa---GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 59968 0.67 0.593067
Target:  5'- aUCGCuGuguuCG-CGGCucCAACCUCCGUCa -3'
miRNA:   3'- -AGCG-Cu---GCgGUCGuuGUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 33374 0.67 0.593067
Target:  5'- gCGCGACGCCGGUcccaacagggacGACAAgggcaccauCCUUgGCa -3'
miRNA:   3'- aGCGCUGCGGUCG------------UUGUU---------GGAGgCGg -5'
31897 3' -56.9 NC_006938.1 + 8884 0.67 0.593067
Target:  5'- aUGCGcuucAUGCCAGCGggccGCGuCCaggCCGCCa -3'
miRNA:   3'- aGCGC----UGCGGUCGU----UGUuGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 274 0.67 0.62521
Target:  5'- cCGCG-UGCCAcCAGCuGCUUCUGUCg -3'
miRNA:   3'- aGCGCuGCGGUcGUUGuUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 6902 0.66 0.67877
Target:  5'- -aGCGGCcCCGGCcuu-GCCUCCccaGCCg -3'
miRNA:   3'- agCGCUGcGGUCGuuguUGGAGG---CGG- -5'
31897 3' -56.9 NC_006938.1 + 41004 0.66 0.67877
Target:  5'- -aGCGACGCCAGgAAC--CCgaaCGCg -3'
miRNA:   3'- agCGCUGCGGUCgUUGuuGGag-GCGg -5'
31897 3' -56.9 NC_006938.1 + 2704 0.66 0.67877
Target:  5'- cCGCcugGGCGCUcguguaaacaagGGUcACGACCacUCCGCCg -3'
miRNA:   3'- aGCG---CUGCGG------------UCGuUGUUGG--AGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 16907 0.66 0.67877
Target:  5'- aCGCGGagaaGCuggcagaguuCAGCAAgAACCcacCCGCCg -3'
miRNA:   3'- aGCGCUg---CG----------GUCGUUgUUGGa--GGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.