Results 101 - 120 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 11244 | 0.66 | 0.657404 |
Target: 5'- -gGCGGUGCCucAGCugcugguCGACCUCCGUg -3' miRNA: 3'- agCGCUGCGG--UCGuu-----GUUGGAGGCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 17551 | 0.66 | 0.657404 |
Target: 5'- gUGCGACaugagaaCGGCGACAACCUggaCGCg -3' miRNA: 3'- aGCGCUGcg-----GUCGUUGUUGGAg--GCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 29548 | 0.66 | 0.668103 |
Target: 5'- cCGuCGACGCgGguguccGCGAgGGCCUgUGCCa -3' miRNA: 3'- aGC-GCUGCGgU------CGUUgUUGGAgGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 58034 | 0.66 | 0.675574 |
Target: 5'- cCGCGcccuCGCCGGCAcagacuggggcgugACGAUCaaCGCCc -3' miRNA: 3'- aGCGCu---GCGGUCGU--------------UGUUGGagGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 6902 | 0.66 | 0.67877 |
Target: 5'- -aGCGGCcCCGGCcuu-GCCUCCccaGCCg -3' miRNA: 3'- agCGCUGcGGUCGuuguUGGAGG---CGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 41004 | 0.66 | 0.67877 |
Target: 5'- -aGCGACGCCAGgAAC--CCgaaCGCg -3' miRNA: 3'- agCGCUGCGGUCgUUGuuGGag-GCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 16907 | 0.66 | 0.67877 |
Target: 5'- aCGCGGagaaGCuggcagaguuCAGCAAgAACCcacCCGCCg -3' miRNA: 3'- aGCGCUg---CG----------GUCGUUgUUGGa--GGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 44233 | 0.66 | 0.693631 |
Target: 5'- cCGCGuccaugaagaaccgUGCCAcCucCGGCCUCCGCCc -3' miRNA: 3'- aGCGCu-------------GCGGUcGuuGUUGGAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 32931 | 0.66 | 0.686213 |
Target: 5'- gUCGCGGCuCgGGCGcguucgugcucccgACGACCUCCucggucucccaGCCc -3' miRNA: 3'- -AGCGCUGcGgUCGU--------------UGUUGGAGG-----------CGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 51496 | 0.66 | 0.67877 |
Target: 5'- aCGCGGaucacUGCCAGCuuguucagGGCgGACUUCCgGCCg -3' miRNA: 3'- aGCGCU-----GCGGUCG--------UUG-UUGGAGG-CGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 802 | 0.66 | 0.646682 |
Target: 5'- -aGUGuuGCCAGCcgguguGGCcGCCUCCGUg -3' miRNA: 3'- agCGCugCGGUCG------UUGuUGGAGGCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 5646 | 0.66 | 0.646682 |
Target: 5'- aCGgGACGCCAGgc-CAGCCguaUCGUCg -3' miRNA: 3'- aGCgCUGCGGUCguuGUUGGa--GGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 48945 | 0.66 | 0.657404 |
Target: 5'- uUCcCGAcCGUCGGCAGcCAGCCaucuggcaggUCUGCCa -3' miRNA: 3'- -AGcGCU-GCGGUCGUU-GUUGG----------AGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 28820 | 0.66 | 0.657404 |
Target: 5'- cCGCGACGCgcaCGGUcAguGCCU-CGCCu -3' miRNA: 3'- aGCGCUGCG---GUCGuUguUGGAgGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 48211 | 0.66 | 0.657404 |
Target: 5'- cCGCcaGCGCCAGCcgUAGgCUCC-CCa -3' miRNA: 3'- aGCGc-UGCGGUCGuuGUUgGAGGcGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 55961 | 0.66 | 0.657404 |
Target: 5'- aCGCGGCGaacuucacUCGGCccgaGACGcCCUCgGCCa -3' miRNA: 3'- aGCGCUGC--------GGUCG----UUGUuGGAGgCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 24500 | 0.66 | 0.668103 |
Target: 5'- cUCGUacAUGCCAGCGAC-ACCagcggugCCGUCg -3' miRNA: 3'- -AGCGc-UGCGGUCGUUGuUGGa------GGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 5184 | 0.66 | 0.67877 |
Target: 5'- cCGCuGgGCCAGCGGCAGCaggaaCGCg -3' miRNA: 3'- aGCGcUgCGGUCGUUGUUGgag--GCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 2704 | 0.66 | 0.67877 |
Target: 5'- cCGCcugGGCGCUcguguaaacaagGGUcACGACCacUCCGCCg -3' miRNA: 3'- aGCG---CUGCGG------------UCGuUGUUGG--AGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 8231 | 0.66 | 0.67877 |
Target: 5'- aCGCGugGaCCGGgcgacCGACGACUgacUCgGCCu -3' miRNA: 3'- aGCGCugC-GGUC-----GUUGUUGG---AGgCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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