miRNA display CGI


Results 61 - 80 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 39956 0.68 0.540223
Target:  5'- -aGCGAa--CGGCAACuuccucACCUCCGUCg -3'
miRNA:   3'- agCGCUgcgGUCGUUGu-----UGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 9847 0.68 0.550684
Target:  5'- ---aGACGCUGGCGuGCAacuccuaucagGCCUCCGUCg -3'
miRNA:   3'- agcgCUGCGGUCGU-UGU-----------UGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 7991 0.68 0.550684
Target:  5'- -gGCGAC-CCGGCc-CAGCUcCCGCCc -3'
miRNA:   3'- agCGCUGcGGUCGuuGUUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 18448 0.68 0.550684
Target:  5'- aCGUGAacaUG-CAGCAGCAGCCgucCCGCg -3'
miRNA:   3'- aGCGCU---GCgGUCGUUGUUGGa--GGCGg -5'
31897 3' -56.9 NC_006938.1 + 18973 0.68 0.550684
Target:  5'- aUGUGAgGcCCAGCGACAGUC-CCGUCa -3'
miRNA:   3'- aGCGCUgC-GGUCGUUGUUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 7177 0.68 0.550684
Target:  5'- gUUGCgGACGCCAcccgucgcguuGUAGCAGCUUCCcuCCa -3'
miRNA:   3'- -AGCG-CUGCGGU-----------CGUUGUUGGAGGc-GG- -5'
31897 3' -56.9 NC_006938.1 + 26403 0.68 0.558043
Target:  5'- -gGCGGCGCUAGUGgcgcgacucguuccACAAUCUCUGgCa -3'
miRNA:   3'- agCGCUGCGGUCGU--------------UGUUGGAGGCgG- -5'
31897 3' -56.9 NC_006938.1 + 38780 0.68 0.561206
Target:  5'- -aGCuGCGCCauGGCGGCGAUCgCCGCg -3'
miRNA:   3'- agCGcUGCGG--UCGUUGUUGGaGGCGg -5'
31897 3' -56.9 NC_006938.1 + 17263 0.68 0.561206
Target:  5'- -gGCGGuCGCCAu---CAACgUCCGCCg -3'
miRNA:   3'- agCGCU-GCGGUcguuGUUGgAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 17200 0.68 0.561206
Target:  5'- -gGUGG-GCCAGCuggucuGCcACCUCCGCg -3'
miRNA:   3'- agCGCUgCGGUCGu-----UGuUGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 39843 0.68 0.568604
Target:  5'- uUCGCGgcaccacucagggcGCGCUcgAGCAucuCGGCCaugCCGCCc -3'
miRNA:   3'- -AGCGC--------------UGCGG--UCGUu--GUUGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 24900 0.68 0.571782
Target:  5'- gUCGCGAUggaGUCAGCGGgAuCCUCaccuGCCa -3'
miRNA:   3'- -AGCGCUG---CGGUCGUUgUuGGAGg---CGG- -5'
31897 3' -56.9 NC_006938.1 + 16282 0.68 0.571782
Target:  5'- gCGCuGgGUCGGCGACAGCC-CCugGCCc -3'
miRNA:   3'- aGCGcUgCGGUCGUUGUUGGaGG--CGG- -5'
31897 3' -56.9 NC_006938.1 + 33563 0.68 0.571782
Target:  5'- cCGCGu--CCGGUucgucGGCAACCgugCCGCCa -3'
miRNA:   3'- aGCGCugcGGUCG-----UUGUUGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 48536 0.68 0.582405
Target:  5'- aCGCuGaACGCCAaCAACAacGCCU-CGCCg -3'
miRNA:   3'- aGCG-C-UGCGGUcGUUGU--UGGAgGCGG- -5'
31897 3' -56.9 NC_006938.1 + 4203 0.68 0.582405
Target:  5'- cUGCuGAcCGCCgAGCuccccaucgucAACGugCUCCGCCu -3'
miRNA:   3'- aGCG-CU-GCGG-UCG-----------UUGUugGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 2207 0.68 0.582405
Target:  5'- -gGCGAgGgCGGCAucauagACGugCUCCgGCCa -3'
miRNA:   3'- agCGCUgCgGUCGU------UGUugGAGG-CGG- -5'
31897 3' -56.9 NC_006938.1 + 45870 0.67 0.592
Target:  5'- gUCGCGAuaCGCCuugacaAGCGGCAugucgauGCCcUCGCCc -3'
miRNA:   3'- -AGCGCU--GCGG------UCGUUGU-------UGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 42809 0.67 0.592
Target:  5'- gCGCGAaguucaccuugucCGCCuccaucAGCGACAccuGCCUCCGgUCg -3'
miRNA:   3'- aGCGCU-------------GCGG------UCGUUGU---UGGAGGC-GG- -5'
31897 3' -56.9 NC_006938.1 + 33374 0.67 0.593067
Target:  5'- gCGCGACGCCGGUcccaacagggacGACAAgggcaccauCCUUgGCa -3'
miRNA:   3'- aGCGCUGCGGUCG------------UUGUU---------GGAGgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.