Results 101 - 120 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 60336 | 0.7 | 0.459467 |
Target: 5'- gCGCGGCgGCCcuCAGC-GCCUCUGCa -3' miRNA: 3'- aGCGCUG-CGGucGUUGuUGGAGGCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 21222 | 0.7 | 0.458497 |
Target: 5'- aUCGUGGCGgCGGacugggugcacguCGACGucgaucCCUCCGCCg -3' miRNA: 3'- -AGCGCUGCgGUC-------------GUUGUu-----GGAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 28590 | 0.7 | 0.440277 |
Target: 5'- uUCGCGcucuaucaGCaGGCGAuCGACCUCCGUCu -3' miRNA: 3'- -AGCGCug------CGgUCGUU-GUUGGAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 61779 | 0.7 | 0.421551 |
Target: 5'- gCGCGGCgGUCGGCAGgAuguucAUCUCCGCg -3' miRNA: 3'- aGCGCUG-CGGUCGUUgU-----UGGAGGCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 33736 | 0.7 | 0.420628 |
Target: 5'- aC-CGACGuCCGGCAuGCAGCaggacggcaugaaCUCCGCCa -3' miRNA: 3'- aGcGCUGC-GGUCGU-UGUUG-------------GAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 15338 | 0.71 | 0.41237 |
Target: 5'- aCGaUGGCGCCAcGCAGC-ACCUCUGaCUg -3' miRNA: 3'- aGC-GCUGCGGU-CGUUGuUGGAGGC-GG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 62552 | 0.71 | 0.41237 |
Target: 5'- gCGCGACGCguCGGCGGCcgagGAgUUCCGUCu -3' miRNA: 3'- aGCGCUGCG--GUCGUUG----UUgGAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 15971 | 0.71 | 0.411459 |
Target: 5'- cCGUGACGCCGGUgauguccaguGACGuggucguACUUCcCGCCg -3' miRNA: 3'- aGCGCUGCGGUCG----------UUGU-------UGGAG-GCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 29287 | 0.71 | 0.394385 |
Target: 5'- -aGUaGACGCCcuggcccuGCGGCucguuGACCUCCGCCu -3' miRNA: 3'- agCG-CUGCGGu-------CGUUG-----UUGGAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 51513 | 0.71 | 0.391731 |
Target: 5'- cCGCGugGaacaaccugcCCGGCGcguucaucgagaucGCAACCgCCGCCa -3' miRNA: 3'- aGCGCugC----------GGUCGU--------------UGUUGGaGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 23140 | 0.71 | 0.380366 |
Target: 5'- gCGCGGCGUCGGUGAUcuGGCCUCgcuugagauccuugaUGCCg -3' miRNA: 3'- aGCGCUGCGGUCGUUG--UUGGAG---------------GCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 18341 | 0.71 | 0.376914 |
Target: 5'- cUGCGAaGCU-GCAuguCAACCUCCGUCa -3' miRNA: 3'- aGCGCUgCGGuCGUu--GUUGGAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 60065 | 0.71 | 0.376054 |
Target: 5'- --aCGugGCCGGggcCAACAACCucaccguUCCGCCa -3' miRNA: 3'- agcGCugCGGUC---GUUGUUGG-------AGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 35815 | 0.71 | 0.368376 |
Target: 5'- gCGCcagugGGCGuCCAacauucGCAACucuGACCUCCGCCg -3' miRNA: 3'- aGCG-----CUGC-GGU------CGUUG---UUGGAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 50761 | 0.71 | 0.368376 |
Target: 5'- cCGgGGCacuGCgCGGCGACGAgCUCCGCUc -3' miRNA: 3'- aGCgCUG---CG-GUCGUUGUUgGAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 12667 | 0.72 | 0.359973 |
Target: 5'- cUCGCGgaagGCGUUgAGC-ACGACCUCgGCCg -3' miRNA: 3'- -AGCGC----UGCGG-UCGuUGUUGGAGgCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 12431 | 0.72 | 0.359973 |
Target: 5'- uUCGCGA-GCCAcuucGUGACGACCgCCGCg -3' miRNA: 3'- -AGCGCUgCGGU----CGUUGUUGGaGGCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 25511 | 0.72 | 0.34357 |
Target: 5'- -aGUGGUGCCAGCGGCcuuGGCCaUCCGCUc -3' miRNA: 3'- agCGCUGCGGUCGUUG---UUGG-AGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 62762 | 0.72 | 0.334781 |
Target: 5'- -gGCGGCcacaccgGCUGGCAACAcuggagACCUCCGCa -3' miRNA: 3'- agCGCUG-------CGGUCGUUGU------UGGAGGCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 32708 | 0.72 | 0.333201 |
Target: 5'- gUCGuCGGCgGCCAGUgccccagagaccucGGCGACCUCCuCCa -3' miRNA: 3'- -AGC-GCUG-CGGUCG--------------UUGUUGGAGGcGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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