miRNA display CGI


Results 81 - 100 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 33736 0.7 0.420628
Target:  5'- aC-CGACGuCCGGCAuGCAGCaggacggcaugaaCUCCGCCa -3'
miRNA:   3'- aGcGCUGC-GGUCGU-UGUUG-------------GAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 35815 0.71 0.368376
Target:  5'- gCGCcagugGGCGuCCAacauucGCAACucuGACCUCCGCCg -3'
miRNA:   3'- aGCG-----CUGC-GGU------CGUUG---UUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 38034 0.67 0.603761
Target:  5'- aCGCGAgcaCGCCgAGCgGAUGGCCaaggCCGCUg -3'
miRNA:   3'- aGCGCU---GCGG-UCG-UUGUUGGa---GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 38544 0.69 0.489058
Target:  5'- aCGCcGCGaUCGGCAACGACUcgaCGCCg -3'
miRNA:   3'- aGCGcUGC-GGUCGUUGUUGGag-GCGG- -5'
31897 3' -56.9 NC_006938.1 + 38780 0.68 0.561206
Target:  5'- -aGCuGCGCCauGGCGGCGAUCgCCGCg -3'
miRNA:   3'- agCGcUGCGG--UCGUUGUUGGaGGCGg -5'
31897 3' -56.9 NC_006938.1 + 39843 0.68 0.568604
Target:  5'- uUCGCGgcaccacucagggcGCGCUcgAGCAucuCGGCCaugCCGCCc -3'
miRNA:   3'- -AGCGC--------------UGCGG--UCGUu--GUUGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 39956 0.68 0.540223
Target:  5'- -aGCGAa--CGGCAACuuccucACCUCCGUCg -3'
miRNA:   3'- agCGCUgcgGUCGUUGu-----UGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 40069 0.67 0.614478
Target:  5'- cUGgGcCGCCuucuGCAGCu-CCUCUGCCc -3'
miRNA:   3'- aGCgCuGCGGu---CGUUGuuGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 41004 0.66 0.67877
Target:  5'- -aGCGACGCCAGgAAC--CCgaaCGCg -3'
miRNA:   3'- agCGCUGCGGUCgUUGuuGGag-GCGg -5'
31897 3' -56.9 NC_006938.1 + 41115 0.69 0.49912
Target:  5'- gUCGgGGCcucuGCCAucGCAACGACCauccCCGCUg -3'
miRNA:   3'- -AGCgCUG----CGGU--CGUUGUUGGa---GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 42432 0.69 0.513358
Target:  5'- cUCGUGGCccgcgcgggacuccaGCCAGUcgGACAGCaUCCGCUc -3'
miRNA:   3'- -AGCGCUG---------------CGGUCG--UUGUUGgAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 42435 0.76 0.18854
Target:  5'- -aGCGACGCCuGCcACucCCUCgGCCg -3'
miRNA:   3'- agCGCUGCGGuCGuUGuuGGAGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 42756 0.66 0.657404
Target:  5'- -gGCGAUGCCAcCAccgaggGCAGCgUCCGUUu -3'
miRNA:   3'- agCGCUGCGGUcGU------UGUUGgAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 42809 0.67 0.592
Target:  5'- gCGCGAaguucaccuugucCGCCuccaucAGCGACAccuGCCUCCGgUCg -3'
miRNA:   3'- aGCGCU-------------GCGG------UCGUUGU---UGGAGGC-GG- -5'
31897 3' -56.9 NC_006938.1 + 44233 0.66 0.693631
Target:  5'- cCGCGuccaugaagaaccgUGCCAcCucCGGCCUCCGCCc -3'
miRNA:   3'- aGCGCu-------------GCGGUcGuuGUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 45438 0.69 0.469227
Target:  5'- cUGCGAUGCCAuaGACG-CCUUCGUg -3'
miRNA:   3'- aGCGCUGCGGUcgUUGUuGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 45607 0.66 0.699968
Target:  5'- ---gGACGCCAaCAGCuauguGACCgCCGCCu -3'
miRNA:   3'- agcgCUGCGGUcGUUG-----UUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 45784 0.66 0.646682
Target:  5'- aCGauuCGCCGGCAACAagGCCgaggCCcguGCCa -3'
miRNA:   3'- aGCgcuGCGGUCGUUGU--UGGa---GG---CGG- -5'
31897 3' -56.9 NC_006938.1 + 45870 0.67 0.592
Target:  5'- gUCGCGAuaCGCCuugacaAGCGGCAugucgauGCCcUCGCCc -3'
miRNA:   3'- -AGCGCU--GCGG------UCGUUGU-------UGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 46315 0.77 0.165189
Target:  5'- -gGCGAcCGCCuGCGACuccuucucGAUCUCCGCCa -3'
miRNA:   3'- agCGCU-GCGGuCGUUG--------UUGGAGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.