miRNA display CGI


Results 101 - 120 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 46989 0.66 0.698913
Target:  5'- gCGCGucaccguGCGCCacacggguGGCAACGACg-CUGCCc -3'
miRNA:   3'- aGCGC-------UGCGG--------UCGUUGUUGgaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 47434 0.67 0.603761
Target:  5'- -gGUGugG-CAGCGGuCGACCcagCCGCCc -3'
miRNA:   3'- agCGCugCgGUCGUU-GUUGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 48211 0.66 0.657404
Target:  5'- cCGCcaGCGCCAGCcgUAGgCUCC-CCa -3'
miRNA:   3'- aGCGc-UGCGGUCGuuGUUgGAGGcGG- -5'
31897 3' -56.9 NC_006938.1 + 48536 0.68 0.582405
Target:  5'- aCGCuGaACGCCAaCAACAacGCCU-CGCCg -3'
miRNA:   3'- aGCG-C-UGCGGUcGUUGU--UGGAgGCGG- -5'
31897 3' -56.9 NC_006938.1 + 48945 0.66 0.657404
Target:  5'- uUCcCGAcCGUCGGCAGcCAGCCaucuggcaggUCUGCCa -3'
miRNA:   3'- -AGcGCU-GCGGUCGUU-GUUGG----------AGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 49308 0.68 0.52983
Target:  5'- cUUGUGaguGCGCCAGacggAGCAcCCUCCgGCCg -3'
miRNA:   3'- -AGCGC---UGCGGUCg---UUGUuGGAGG-CGG- -5'
31897 3' -56.9 NC_006938.1 + 50088 0.66 0.699968
Target:  5'- cCGCcaACGCUcaGGCcGCGAUCgucgCCGCCg -3'
miRNA:   3'- aGCGc-UGCGG--UCGuUGUUGGa---GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 50761 0.71 0.368376
Target:  5'- cCGgGGCacuGCgCGGCGACGAgCUCCGCUc -3'
miRNA:   3'- aGCgCUG---CG-GUCGUUGUUgGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 50842 0.73 0.297643
Target:  5'- gUGUGACGCgGG--GCGAgCUCCGCCa -3'
miRNA:   3'- aGCGCUGCGgUCguUGUUgGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 51015 0.69 0.469227
Target:  5'- gCGCguucGACGCU-GCcACcggGGCCUCCGCCg -3'
miRNA:   3'- aGCG----CUGCGGuCGuUG---UUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 51045 0.66 0.646682
Target:  5'- nCGCGuuUGCCAGCGcCAuccugACCaUCGCCa -3'
miRNA:   3'- aGCGCu-GCGGUCGUuGU-----UGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 51111 0.67 0.635948
Target:  5'- aUCGUGGCGaUCAGCAcGCGGCggUCGUCa -3'
miRNA:   3'- -AGCGCUGC-GGUCGU-UGUUGgaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 51288 0.69 0.519511
Target:  5'- gCGCGuucCGCCAGCucgccACGACCgugCagGCCg -3'
miRNA:   3'- aGCGCu--GCGGUCGu----UGUUGGa--Gg-CGG- -5'
31897 3' -56.9 NC_006938.1 + 51405 0.73 0.283429
Target:  5'- gCGUGugGCCGGCcAUcGCCgCCGCUg -3'
miRNA:   3'- aGCGCugCGGUCGuUGuUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 51496 0.66 0.67877
Target:  5'- aCGCGGaucacUGCCAGCuuguucagGGCgGACUUCCgGCCg -3'
miRNA:   3'- aGCGCU-----GCGGUCG--------UUG-UUGGAGG-CGG- -5'
31897 3' -56.9 NC_006938.1 + 51513 0.71 0.391731
Target:  5'- cCGCGugGaacaaccugcCCGGCGcguucaucgagaucGCAACCgCCGCCa -3'
miRNA:   3'- aGCGCugC----------GGUCGU--------------UGUUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 51973 0.69 0.519511
Target:  5'- cUCcCGACGgaAGCcaaaGGCCUCCGCCa -3'
miRNA:   3'- -AGcGCUGCggUCGuug-UUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 53704 0.69 0.479092
Target:  5'- cCGCGuACGCCcuGGaGACgAACCUCCGUg -3'
miRNA:   3'- aGCGC-UGCGG--UCgUUG-UUGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 54192 1.12 0.000574
Target:  5'- cUCGCGACGCCAGCAACAACCUCCGCCu -3'
miRNA:   3'- -AGCGCUGCGGUCGUUGUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 55408 0.66 0.668103
Target:  5'- gCGCGcuCGCCgcaGGCGGCcugGGCUUCuCGCCc -3'
miRNA:   3'- aGCGCu-GCGG---UCGUUG---UUGGAG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.