miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 42756 0.66 0.657404
Target:  5'- -gGCGAUGCCAcCAccgaggGCAGCgUCCGUUu -3'
miRNA:   3'- agCGCUGCGGUcGU------UGUUGgAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 42435 0.76 0.18854
Target:  5'- -aGCGACGCCuGCcACucCCUCgGCCg -3'
miRNA:   3'- agCGCUGCGGuCGuUGuuGGAGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 42432 0.69 0.513358
Target:  5'- cUCGUGGCccgcgcgggacuccaGCCAGUcgGACAGCaUCCGCUc -3'
miRNA:   3'- -AGCGCUG---------------CGGUCG--UUGUUGgAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 41115 0.69 0.49912
Target:  5'- gUCGgGGCcucuGCCAucGCAACGACCauccCCGCUg -3'
miRNA:   3'- -AGCgCUG----CGGU--CGUUGUUGGa---GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 41004 0.66 0.67877
Target:  5'- -aGCGACGCCAGgAAC--CCgaaCGCg -3'
miRNA:   3'- agCGCUGCGGUCgUUGuuGGag-GCGg -5'
31897 3' -56.9 NC_006938.1 + 40069 0.67 0.614478
Target:  5'- cUGgGcCGCCuucuGCAGCu-CCUCUGCCc -3'
miRNA:   3'- aGCgCuGCGGu---CGUUGuuGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 39956 0.68 0.540223
Target:  5'- -aGCGAa--CGGCAACuuccucACCUCCGUCg -3'
miRNA:   3'- agCGCUgcgGUCGUUGu-----UGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 39843 0.68 0.568604
Target:  5'- uUCGCGgcaccacucagggcGCGCUcgAGCAucuCGGCCaugCCGCCc -3'
miRNA:   3'- -AGCGC--------------UGCGG--UCGUu--GUUGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 38780 0.68 0.561206
Target:  5'- -aGCuGCGCCauGGCGGCGAUCgCCGCg -3'
miRNA:   3'- agCGcUGCGG--UCGUUGUUGGaGGCGg -5'
31897 3' -56.9 NC_006938.1 + 38544 0.69 0.489058
Target:  5'- aCGCcGCGaUCGGCAACGACUcgaCGCCg -3'
miRNA:   3'- aGCGcUGC-GGUCGUUGUUGGag-GCGG- -5'
31897 3' -56.9 NC_006938.1 + 38034 0.67 0.603761
Target:  5'- aCGCGAgcaCGCCgAGCgGAUGGCCaaggCCGCUg -3'
miRNA:   3'- aGCGCU---GCGG-UCG-UUGUUGGa---GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 35815 0.71 0.368376
Target:  5'- gCGCcagugGGCGuCCAacauucGCAACucuGACCUCCGCCg -3'
miRNA:   3'- aGCG-----CUGC-GGU------CGUUG---UUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 33736 0.7 0.420628
Target:  5'- aC-CGACGuCCGGCAuGCAGCaggacggcaugaaCUCCGCCa -3'
miRNA:   3'- aGcGCUGC-GGUCGU-UGUUG-------------GAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 33563 0.68 0.571782
Target:  5'- cCGCGu--CCGGUucgucGGCAACCgugCCGCCa -3'
miRNA:   3'- aGCGCugcGGUCG-----UUGUUGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 33447 0.83 0.064735
Target:  5'- gCGCGaACGCCcaGGCAGaacuccCAGCCUCCGCCg -3'
miRNA:   3'- aGCGC-UGCGG--UCGUU------GUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 33374 0.67 0.593067
Target:  5'- gCGCGACGCCGGUcccaacagggacGACAAgggcaccauCCUUgGCa -3'
miRNA:   3'- aGCGCUGCGGUCG------------UUGUU---------GGAGgCGg -5'
31897 3' -56.9 NC_006938.1 + 32931 0.66 0.686213
Target:  5'- gUCGCGGCuCgGGCGcguucgugcucccgACGACCUCCucggucucccaGCCc -3'
miRNA:   3'- -AGCGCUGcGgUCGU--------------UGUUGGAGG-----------CGG- -5'
31897 3' -56.9 NC_006938.1 + 32708 0.72 0.333201
Target:  5'- gUCGuCGGCgGCCAGUgccccagagaccucGGCGACCUCCuCCa -3'
miRNA:   3'- -AGC-GCUG-CGGUCG--------------UUGUUGGAGGcGG- -5'
31897 3' -56.9 NC_006938.1 + 31884 0.73 0.297643
Target:  5'- gCGCGuaguACGCCAGgAACuugGCCgCCGCCc -3'
miRNA:   3'- aGCGC----UGCGGUCgUUGu--UGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 30426 0.67 0.593067
Target:  5'- cUCGCGuAUGCCcuuGGCGAUGuCgaCCGCCa -3'
miRNA:   3'- -AGCGC-UGCGG---UCGUUGUuGgaGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.