miRNA display CGI


Results 81 - 100 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 23140 0.71 0.380366
Target:  5'- gCGCGGCGUCGGUGAUcuGGCCUCgcuugagauccuugaUGCCg -3'
miRNA:   3'- aGCGCUGCGGUCGUUG--UUGGAG---------------GCGG- -5'
31897 3' -56.9 NC_006938.1 + 21699 0.69 0.489058
Target:  5'- gCGUGACuGUgAGCGACGGCaaCUCCaGCCc -3'
miRNA:   3'- aGCGCUG-CGgUCGUUGUUG--GAGG-CGG- -5'
31897 3' -56.9 NC_006938.1 + 21222 0.7 0.458497
Target:  5'- aUCGUGGCGgCGGacugggugcacguCGACGucgaucCCUCCGCCg -3'
miRNA:   3'- -AGCGCUGCgGUC-------------GUUGUu-----GGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 20115 0.66 0.689395
Target:  5'- cCGCGugGUCuccugGGCcuccGACAACCagCGCUg -3'
miRNA:   3'- aGCGCugCGG-----UCG----UUGUUGGagGCGG- -5'
31897 3' -56.9 NC_006938.1 + 19903 0.69 0.49912
Target:  5'- cCGCGugGUUGGCAugggauacaACGGCUUCC-CCg -3'
miRNA:   3'- aGCGCugCGGUCGU---------UGUUGGAGGcGG- -5'
31897 3' -56.9 NC_006938.1 + 19498 0.67 0.614478
Target:  5'- -aGUGACuCacacaGGCGACGACCU-CGCCa -3'
miRNA:   3'- agCGCUGcGg----UCGUUGUUGGAgGCGG- -5'
31897 3' -56.9 NC_006938.1 + 18973 0.68 0.550684
Target:  5'- aUGUGAgGcCCAGCGACAGUC-CCGUCa -3'
miRNA:   3'- aGCGCUgC-GGUCGUUGUUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 18448 0.68 0.550684
Target:  5'- aCGUGAacaUG-CAGCAGCAGCCgucCCGCg -3'
miRNA:   3'- aGCGCU---GCgGUCGUUGUUGGa--GGCGg -5'
31897 3' -56.9 NC_006938.1 + 18341 0.71 0.376914
Target:  5'- cUGCGAaGCU-GCAuguCAACCUCCGUCa -3'
miRNA:   3'- aGCGCUgCGGuCGUu--GUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 17551 0.66 0.657404
Target:  5'- gUGCGACaugagaaCGGCGACAACCUggaCGCg -3'
miRNA:   3'- aGCGCUGcg-----GUCGUUGUUGGAg--GCGg -5'
31897 3' -56.9 NC_006938.1 + 17263 0.68 0.561206
Target:  5'- -gGCGGuCGCCAu---CAACgUCCGCCg -3'
miRNA:   3'- agCGCU-GCGGUcguuGUUGgAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 17200 0.68 0.561206
Target:  5'- -gGUGG-GCCAGCuggucuGCcACCUCCGCg -3'
miRNA:   3'- agCGCUgCGGUCGu-----UGuUGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 16907 0.66 0.67877
Target:  5'- aCGCGGagaaGCuggcagaguuCAGCAAgAACCcacCCGCCg -3'
miRNA:   3'- aGCGCUg---CG----------GUCGUUgUUGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 16792 0.67 0.614478
Target:  5'- cUCGauGCGCCAGCGGgAGCCgUCUGaCUc -3'
miRNA:   3'- -AGCgcUGCGGUCGUUgUUGG-AGGC-GG- -5'
31897 3' -56.9 NC_006938.1 + 16282 0.68 0.571782
Target:  5'- gCGCuGgGUCGGCGACAGCC-CCugGCCc -3'
miRNA:   3'- aGCGcUgCGGUCGUUGUUGGaGG--CGG- -5'
31897 3' -56.9 NC_006938.1 + 16163 0.69 0.52054
Target:  5'- aCGCGGCGCuacgacgucgcaCAGCAcuccuggaacaugcuCAACCUCgCGCUg -3'
miRNA:   3'- aGCGCUGCG------------GUCGUu--------------GUUGGAG-GCGG- -5'
31897 3' -56.9 NC_006938.1 + 15971 0.71 0.411459
Target:  5'- cCGUGACGCCGGUgauguccaguGACGuggucguACUUCcCGCCg -3'
miRNA:   3'- aGCGCUGCGGUCG----------UUGU-------UGGAG-GCGG- -5'
31897 3' -56.9 NC_006938.1 + 15338 0.71 0.41237
Target:  5'- aCGaUGGCGCCAcGCAGC-ACCUCUGaCUg -3'
miRNA:   3'- aGC-GCUGCGGU-CGUUGuUGGAGGC-GG- -5'
31897 3' -56.9 NC_006938.1 + 15095 0.75 0.220349
Target:  5'- uUUGCcACGCCAGacuGCGugggccggACCUCCGCCa -3'
miRNA:   3'- -AGCGcUGCGGUCgu-UGU--------UGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 14893 0.73 0.276526
Target:  5'- gUGUGACGUCAGCGuuguuccggACGGCCUuggUCGCCu -3'
miRNA:   3'- aGCGCUGCGGUCGU---------UGUUGGA---GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.