miRNA display CGI


Results 101 - 120 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 14843 0.69 0.479092
Target:  5'- cUUGCGA-GCCAGCGu--GCCaUCGCCa -3'
miRNA:   3'- -AGCGCUgCGGUCGUuguUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 13183 0.73 0.297643
Target:  5'- aUGCGACG--AGCggUGGCCUCCGCUc -3'
miRNA:   3'- aGCGCUGCggUCGuuGUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 13012 0.69 0.518484
Target:  5'- gUGCGAuuagagaUGCCaaagaGGCGAUcaguGACCUCUGCCa -3'
miRNA:   3'- aGCGCU-------GCGG-----UCGUUG----UUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 12667 0.72 0.359973
Target:  5'- cUCGCGgaagGCGUUgAGC-ACGACCUCgGCCg -3'
miRNA:   3'- -AGCGC----UGCGG-UCGuUGUUGGAGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 12537 0.68 0.52983
Target:  5'- aCGCGGCGgaggccCCGGUGGCAGCgUCgaacgCGCCg -3'
miRNA:   3'- aGCGCUGC------GGUCGUUGUUGgAG-----GCGG- -5'
31897 3' -56.9 NC_006938.1 + 12431 0.72 0.359973
Target:  5'- uUCGCGA-GCCAcuucGUGACGACCgCCGCg -3'
miRNA:   3'- -AGCGCUgCGGU----CGUUGUUGGaGGCGg -5'
31897 3' -56.9 NC_006938.1 + 11610 0.68 0.52983
Target:  5'- uUCGCGGCagauCgGGCGGCAccGCCgagcccaCCGCCg -3'
miRNA:   3'- -AGCGCUGc---GgUCGUUGU--UGGa------GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 11244 0.66 0.657404
Target:  5'- -gGCGGUGCCucAGCugcugguCGACCUCCGUg -3'
miRNA:   3'- agCGCUGCGG--UCGuu-----GUUGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 10039 0.67 0.614478
Target:  5'- cUCGCuGACGgCGGaCAACGuguCCUCUGgCa -3'
miRNA:   3'- -AGCG-CUGCgGUC-GUUGUu--GGAGGCgG- -5'
31897 3' -56.9 NC_006938.1 + 9847 0.68 0.550684
Target:  5'- ---aGACGCUGGCGuGCAacuccuaucagGCCUCCGUCg -3'
miRNA:   3'- agcgCUGCGGUCGU-UGU-----------UGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 9329 0.69 0.49912
Target:  5'- aCGaCGAUGUCAGUucCAACCUgCGUCc -3'
miRNA:   3'- aGC-GCUGCGGUCGuuGUUGGAgGCGG- -5'
31897 3' -56.9 NC_006938.1 + 9164 0.75 0.220349
Target:  5'- gUGCGuCGCCAGCucUGGCCaCCGCCg -3'
miRNA:   3'- aGCGCuGCGGUCGuuGUUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 9010 0.69 0.489058
Target:  5'- -aGCG-CGCCaAGCAG--GCCgCCGCCa -3'
miRNA:   3'- agCGCuGCGG-UCGUUguUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 8976 0.66 0.699968
Target:  5'- aCGCu-CGCaCGGUGACGGCCUUguugaaCGCCu -3'
miRNA:   3'- aGCGcuGCG-GUCGUUGUUGGAG------GCGG- -5'
31897 3' -56.9 NC_006938.1 + 8884 0.67 0.593067
Target:  5'- aUGCGcuucAUGCCAGCGggccGCGuCCaggCCGCCa -3'
miRNA:   3'- aGCGC----UGCGGUCGU----UGUuGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 8294 0.66 0.689395
Target:  5'- cCG-GugGUCGGCGAcCGGCUcgUCUGCCu -3'
miRNA:   3'- aGCgCugCGGUCGUU-GUUGG--AGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 8231 0.66 0.67877
Target:  5'- aCGCGugGaCCGGgcgacCGACGACUgacUCgGCCu -3'
miRNA:   3'- aGCGCugC-GGUC-----GUUGUUGG---AGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 7991 0.68 0.550684
Target:  5'- -gGCGAC-CCGGCc-CAGCUcCCGCCc -3'
miRNA:   3'- agCGCUGcGGUCGuuGUUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 7177 0.68 0.550684
Target:  5'- gUUGCgGACGCCAcccgucgcguuGUAGCAGCUUCCcuCCa -3'
miRNA:   3'- -AGCG-CUGCGGU-----------CGUUGUUGGAGGc-GG- -5'
31897 3' -56.9 NC_006938.1 + 6902 0.66 0.67877
Target:  5'- -aGCGGCcCCGGCcuu-GCCUCCccaGCCg -3'
miRNA:   3'- agCGCUGcGGUCGuuguUGGAGG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.