miRNA display CGI


Results 61 - 80 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 28049 0.68 0.52983
Target:  5'- --uCGAUGCCaagGGCGACAGCaagCCGCUg -3'
miRNA:   3'- agcGCUGCGG---UCGUUGUUGga-GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 23683 0.68 0.52983
Target:  5'- gCGCGACGUCGGCcagGGCGGCa-UgGCCg -3'
miRNA:   3'- aGCGCUGCGGUCG---UUGUUGgaGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 1323 0.68 0.52983
Target:  5'- gCGUGGCaucGCCuuGGCAGCAagGCCgccgUCGCCa -3'
miRNA:   3'- aGCGCUG---CGG--UCGUUGU--UGGa---GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 16163 0.69 0.52054
Target:  5'- aCGCGGCGCuacgacgucgcaCAGCAcuccuggaacaugcuCAACCUCgCGCUg -3'
miRNA:   3'- aGCGCUGCG------------GUCGUu--------------GUUGGAG-GCGG- -5'
31897 3' -56.9 NC_006938.1 + 51288 0.69 0.519511
Target:  5'- gCGCGuucCGCCAGCucgccACGACCgugCagGCCg -3'
miRNA:   3'- aGCGCu--GCGGUCGu----UGUUGGa--Gg-CGG- -5'
31897 3' -56.9 NC_006938.1 + 53704 0.69 0.479092
Target:  5'- cCGCGuACGCCcuGGaGACgAACCUCCGUg -3'
miRNA:   3'- aGCGC-UGCGG--UCgUUG-UUGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 9010 0.69 0.489058
Target:  5'- -aGCG-CGCCaAGCAG--GCCgCCGCCa -3'
miRNA:   3'- agCGCuGCGG-UCGUUguUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 38544 0.69 0.489058
Target:  5'- aCGCcGCGaUCGGCAACGACUcgaCGCCg -3'
miRNA:   3'- aGCGcUGC-GGUCGUUGUUGGag-GCGG- -5'
31897 3' -56.9 NC_006938.1 + 19903 0.69 0.49912
Target:  5'- cCGCGugGUUGGCAugggauacaACGGCUUCC-CCg -3'
miRNA:   3'- aGCGCugCGGUCGU---------UGUUGGAGGcGG- -5'
31897 3' -56.9 NC_006938.1 + 41115 0.69 0.49912
Target:  5'- gUCGgGGCcucuGCCAucGCAACGACCauccCCGCUg -3'
miRNA:   3'- -AGCgCUG----CGGU--CGUUGUUGGa---GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 562 0.69 0.518484
Target:  5'- aCGCGAUcgacaugugggagGCCGGUgccGAgAGgCUCCGCCu -3'
miRNA:   3'- aGCGCUG-------------CGGUCG---UUgUUgGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 1720 0.69 0.519511
Target:  5'- gCGaCGACGCCAugGACAGCUcCgGCCg -3'
miRNA:   3'- aGC-GCUGCGGUcgUUGUUGGaGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 24500 0.66 0.668103
Target:  5'- cUCGUacAUGCCAGCGAC-ACCagcggugCCGUCg -3'
miRNA:   3'- -AGCGc-UGCGGUCGUUGuUGGa------GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 5184 0.66 0.67877
Target:  5'- cCGCuGgGCCAGCGGCAGCaggaaCGCg -3'
miRNA:   3'- aGCGcUgCGGUCGUUGUUGgag--GCGg -5'
31897 3' -56.9 NC_006938.1 + 8231 0.66 0.67877
Target:  5'- aCGCGugGaCCGGgcgacCGACGACUgacUCgGCCu -3'
miRNA:   3'- aGCGCugC-GGUC-----GUUGUUGG---AGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 51496 0.66 0.67877
Target:  5'- aCGCGGaucacUGCCAGCuuguucagGGCgGACUUCCgGCCg -3'
miRNA:   3'- aGCGCU-----GCGGUCG--------UUG-UUGGAGG-CGG- -5'
31897 3' -56.9 NC_006938.1 + 32931 0.66 0.686213
Target:  5'- gUCGCGGCuCgGGCGcguucgugcucccgACGACCUCCucggucucccaGCCc -3'
miRNA:   3'- -AGCGCUGcGgUCGU--------------UGUUGGAGG-----------CGG- -5'
31897 3' -56.9 NC_006938.1 + 44233 0.66 0.693631
Target:  5'- cCGCGuccaugaagaaccgUGCCAcCucCGGCCUCCGCCc -3'
miRNA:   3'- aGCGCu-------------GCGGUcGuuGUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 8976 0.66 0.699968
Target:  5'- aCGCu-CGCaCGGUGACGGCCUUguugaaCGCCu -3'
miRNA:   3'- aGCGcuGCG-GUCGUUGUUGGAG------GCGG- -5'
31897 3' -56.9 NC_006938.1 + 33447 0.83 0.064735
Target:  5'- gCGCGaACGCCcaGGCAGaacuccCAGCCUCCGCCg -3'
miRNA:   3'- aGCGC-UGCGG--UCGUU------GUUGGAGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.