miRNA display CGI


Results 121 - 133 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 39843 0.68 0.568604
Target:  5'- uUCGCGgcaccacucagggcGCGCUcgAGCAucuCGGCCaugCCGCCc -3'
miRNA:   3'- -AGCGC--------------UGCGG--UCGUu--GUUGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 24900 0.68 0.571782
Target:  5'- gUCGCGAUggaGUCAGCGGgAuCCUCaccuGCCa -3'
miRNA:   3'- -AGCGCUG---CGGUCGUUgUuGGAGg---CGG- -5'
31897 3' -56.9 NC_006938.1 + 42809 0.67 0.592
Target:  5'- gCGCGAaguucaccuugucCGCCuccaucAGCGACAccuGCCUCCGgUCg -3'
miRNA:   3'- aGCGCU-------------GCGG------UCGUUGU---UGGAGGC-GG- -5'
31897 3' -56.9 NC_006938.1 + 45870 0.67 0.592
Target:  5'- gUCGCGAuaCGCCuugacaAGCGGCAugucgauGCCcUCGCCc -3'
miRNA:   3'- -AGCGCU--GCGG------UCGUUGU-------UGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 30426 0.67 0.593067
Target:  5'- cUCGCGuAUGCCcuuGGCGAUGuCgaCCGCCa -3'
miRNA:   3'- -AGCGC-UGCGG---UCGUUGUuGgaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 47434 0.67 0.603761
Target:  5'- -gGUGugG-CAGCGGuCGACCcagCCGCCc -3'
miRNA:   3'- agCGCugCgGUCGUU-GUUGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 4766 0.67 0.603761
Target:  5'- aUCGUGACGCgauuGGUGAau-CCUCgGCCa -3'
miRNA:   3'- -AGCGCUGCGg---UCGUUguuGGAGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 16792 0.67 0.614478
Target:  5'- cUCGauGCGCCAGCGGgAGCCgUCUGaCUc -3'
miRNA:   3'- -AGCgcUGCGGUCGUUgUUGG-AGGC-GG- -5'
31897 3' -56.9 NC_006938.1 + 26032 0.67 0.614478
Target:  5'- -gGCGGCcucguccagcuuGCCAGCGgcgGCGGCCUCgaGCUc -3'
miRNA:   3'- agCGCUG------------CGGUCGU---UGUUGGAGg-CGG- -5'
31897 3' -56.9 NC_006938.1 + 40069 0.67 0.614478
Target:  5'- cUGgGcCGCCuucuGCAGCu-CCUCUGCCc -3'
miRNA:   3'- aGCgCuGCGGu---CGUUGuuGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 27569 0.67 0.61877
Target:  5'- -gGCGAUGCCguugauggcggugcgAGUGAUGGCCUCgGCg -3'
miRNA:   3'- agCGCUGCGG---------------UCGUUGUUGGAGgCGg -5'
31897 3' -56.9 NC_006938.1 + 274 0.67 0.62521
Target:  5'- cCGCG-UGCCAcCAGCuGCUUCUGUCg -3'
miRNA:   3'- aGCGCuGCGGUcGUUGuUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 62150 0.66 0.699968
Target:  5'- cCGUGGCGaCCGGCGugucucCGAUCcCCGCg -3'
miRNA:   3'- aGCGCUGC-GGUCGUu-----GUUGGaGGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.