miRNA display CGI


Results 101 - 120 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 55408 0.66 0.668103
Target:  5'- gCGCGcuCGCCgcaGGCGGCcugGGCUUCuCGCCc -3'
miRNA:   3'- aGCGCu-GCGG---UCGUUG---UUGGAG-GCGG- -5'
31897 3' -56.9 NC_006938.1 + 17551 0.66 0.657404
Target:  5'- gUGCGACaugagaaCGGCGACAACCUggaCGCg -3'
miRNA:   3'- aGCGCUGcg-----GUCGUUGUUGGAg--GCGg -5'
31897 3' -56.9 NC_006938.1 + 2061 0.66 0.657404
Target:  5'- aCGCGAgggGCCGGUucuACGACUg-CGCCg -3'
miRNA:   3'- aGCGCUg--CGGUCGu--UGUUGGagGCGG- -5'
31897 3' -56.9 NC_006938.1 + 45607 0.66 0.699968
Target:  5'- ---gGACGCCAaCAGCuauguGACCgCCGCCu -3'
miRNA:   3'- agcgCUGCGGUcGUUG-----UUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 50088 0.66 0.699968
Target:  5'- cCGCcaACGCUcaGGCcGCGAUCgucgCCGCCg -3'
miRNA:   3'- aGCGc-UGCGG--UCGuUGUUGGa---GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 24235 0.66 0.699968
Target:  5'- aUCGUGAaGCuCGGCAcCcgGACCgaCCGCCa -3'
miRNA:   3'- -AGCGCUgCG-GUCGUuG--UUGGa-GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 7991 0.68 0.550684
Target:  5'- -gGCGAC-CCGGCc-CAGCUcCCGCCc -3'
miRNA:   3'- agCGCUGcGGUCGuuGUUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 17263 0.68 0.561206
Target:  5'- -gGCGGuCGCCAu---CAACgUCCGCCg -3'
miRNA:   3'- agCGCU-GCGGUcguuGUUGgAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 17200 0.68 0.561206
Target:  5'- -gGUGG-GCCAGCuggucuGCcACCUCCGCg -3'
miRNA:   3'- agCGCUgCGGUCGu-----UGuUGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 16282 0.68 0.571782
Target:  5'- gCGCuGgGUCGGCGACAGCC-CCugGCCc -3'
miRNA:   3'- aGCGcUgCGGUCGUUGUUGGaGG--CGG- -5'
31897 3' -56.9 NC_006938.1 + 33563 0.68 0.571782
Target:  5'- cCGCGu--CCGGUucgucGGCAACCgugCCGCCa -3'
miRNA:   3'- aGCGCugcGGUCG-----UUGUUGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 2207 0.68 0.582405
Target:  5'- -gGCGAgGgCGGCAucauagACGugCUCCgGCCa -3'
miRNA:   3'- agCGCUgCgGUCGU------UGUugGAGG-CGG- -5'
31897 3' -56.9 NC_006938.1 + 4203 0.68 0.582405
Target:  5'- cUGCuGAcCGCCgAGCuccccaucgucAACGugCUCCGCCu -3'
miRNA:   3'- aGCG-CU-GCGG-UCG-----------UUGUugGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 48536 0.68 0.582405
Target:  5'- aCGCuGaACGCCAaCAACAacGCCU-CGCCg -3'
miRNA:   3'- aGCG-C-UGCGGUcGUUGU--UGGAgGCGG- -5'
31897 3' -56.9 NC_006938.1 + 8884 0.67 0.593067
Target:  5'- aUGCGcuucAUGCCAGCGggccGCGuCCaggCCGCCa -3'
miRNA:   3'- aGCGC----UGCGGUCGU----UGUuGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 33374 0.67 0.593067
Target:  5'- gCGCGACGCCGGUcccaacagggacGACAAgggcaccauCCUUgGCa -3'
miRNA:   3'- aGCGCUGCGGUCG------------UUGUU---------GGAGgCGg -5'
31897 3' -56.9 NC_006938.1 + 38034 0.67 0.603761
Target:  5'- aCGCGAgcaCGCCgAGCgGAUGGCCaaggCCGCUg -3'
miRNA:   3'- aGCGCU---GCGG-UCG-UUGUUGGa---GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 59968 0.67 0.593067
Target:  5'- aUCGCuGuguuCG-CGGCucCAACCUCCGUCa -3'
miRNA:   3'- -AGCG-Cu---GCgGUCGuuGUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 19498 0.67 0.614478
Target:  5'- -aGUGACuCacacaGGCGACGACCU-CGCCa -3'
miRNA:   3'- agCGCUGcGg----UCGUUGUUGGAgGCGG- -5'
31897 3' -56.9 NC_006938.1 + 25495 0.66 0.699968
Target:  5'- cCGCGAcCGCgaCGGCAACA---UCCGCa -3'
miRNA:   3'- aGCGCU-GCG--GUCGUUGUuggAGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.