Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31899 | 3' | -63.4 | NC_006938.1 | + | 55509 | 1.09 | 0.000218 |
Target: 5'- aCCACGGAGGGGCCACGCCUCGGCGACc -3' miRNA: 3'- -GGUGCCUCCCCGGUGCGGAGCCGCUG- -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 24490 | 0.72 | 0.156342 |
Target: 5'- gCACGGAGGaGGaCgACGCCUUcaaGGCGGa -3' miRNA: 3'- gGUGCCUCC-CC-GgUGCGGAG---CCGCUg -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 19263 | 0.71 | 0.172645 |
Target: 5'- uCCACuuuGGAGGGGacauugaucuCCACGCagguccgcaugauCUCGGCGAUc -3' miRNA: 3'- -GGUG---CCUCCCC----------GGUGCG-------------GAGCCGCUG- -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 1886 | 0.71 | 0.17751 |
Target: 5'- gCC-CGGAcaGGGGUCGCGCggCGGuCGGCa -3' miRNA: 3'- -GGuGCCU--CCCCGGUGCGgaGCC-GCUG- -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 62755 | 0.7 | 0.191403 |
Target: 5'- gCACGGAGGcGGCCACaCCggcUGGCaACa -3' miRNA: 3'- gGUGCCUCC-CCGGUGcGGa--GCCGcUG- -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 9257 | 0.7 | 0.216677 |
Target: 5'- gCCACGGcGGuGGCCAgaGCU--GGCGACg -3' miRNA: 3'- -GGUGCCuCC-CCGGUg-CGGagCCGCUG- -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 33987 | 0.7 | 0.222063 |
Target: 5'- cUCGCGGAGGGGCU---CCaUGGUGGCa -3' miRNA: 3'- -GGUGCCUCCCCGGugcGGaGCCGCUG- -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 39926 | 0.69 | 0.227562 |
Target: 5'- cUCGUGGGgcGGGGCCACGCUcagUGGCGGa -3' miRNA: 3'- -GGUGCCU--CCCCGGUGCGGa--GCCGCUg -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 41976 | 0.69 | 0.233177 |
Target: 5'- gCACGGAGcgcaucauGGGCgACGUCggcaCGGCGAa -3' miRNA: 3'- gGUGCCUC--------CCCGgUGCGGa---GCCGCUg -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 37133 | 0.69 | 0.242988 |
Target: 5'- cCCACGGugacAGGGGCCgggucaugucccgcGCGCCggucCGGCu-- -3' miRNA: 3'- -GGUGCC----UCCCCGG--------------UGCGGa---GCCGcug -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 9592 | 0.69 | 0.247127 |
Target: 5'- ---gGGAGGGGCUgcuCGCCgcagggauugguggCGGCGAUg -3' miRNA: 3'- ggugCCUCCCCGGu--GCGGa-------------GCCGCUG- -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 27519 | 0.69 | 0.259274 |
Target: 5'- gCCA-GGAcugcGGGGCCACGCacccgcccguucgCGGUGGCu -3' miRNA: 3'- -GGUgCCU----CCCCGGUGCGga-----------GCCGCUG- -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 15143 | 0.68 | 0.269339 |
Target: 5'- -aACGGAGGGGCgGuCGUCgcuccggagcCGGUGACc -3' miRNA: 3'- ggUGCCUCCCCGgU-GCGGa---------GCCGCUG- -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 55889 | 0.68 | 0.289055 |
Target: 5'- aCAgGcGAGaGGGUgGgGCCUUGGUGGCg -3' miRNA: 3'- gGUgC-CUC-CCCGgUgCGGAGCCGCUG- -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 32518 | 0.67 | 0.307754 |
Target: 5'- cCCACucuGGAGGGGUaCACcuccaugauguccuGCCUgCGGaCGACg -3' miRNA: 3'- -GGUG---CCUCCCCG-GUG--------------CGGA-GCC-GCUG- -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 40837 | 0.67 | 0.309888 |
Target: 5'- uCC-CGGuuGGGCUGCGCCUUGcGCuGCu -3' miRNA: 3'- -GGuGCCucCCCGGUGCGGAGC-CGcUG- -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 53630 | 0.67 | 0.3244 |
Target: 5'- -aGCGGAGugucGGGCCGa-CCUgGGUGACu -3' miRNA: 3'- ggUGCCUC----CCCGGUgcGGAgCCGCUG- -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 17476 | 0.67 | 0.3244 |
Target: 5'- uCCA-GGAGGGGaggguggaCAUGUCU-GGCGGCu -3' miRNA: 3'- -GGUgCCUCCCCg-------GUGCGGAgCCGCUG- -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 45892 | 0.66 | 0.354923 |
Target: 5'- gCGCGGAGaacguGGCaCGgGCCUCGGCc-- -3' miRNA: 3'- gGUGCCUCc----CCG-GUgCGGAGCCGcug -5' |
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31899 | 3' | -63.4 | NC_006938.1 | + | 47410 | 0.66 | 0.354923 |
Target: 5'- -gACgGGAGGGuGCCGagagucucuuCCUCGGCGAUc -3' miRNA: 3'- ggUG-CCUCCC-CGGUgc--------GGAGCCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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