miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
31899	3'	-63.4	NC_006938.1	+	33987	0.7	0.222063
	Target:  5'- cUCGCGGAGGGGCU---CCaUGGUGGCa -3' miRNA:   3'- -GGUGCCUCCCCGGugcGGaGCCGCUG- -5'
31899	3'	-63.4	NC_006938.1	+	9257	0.7	0.216677
	Target:  5'- gCCACGGcGGuGGCCAgaGCU--GGCGACg -3' miRNA:   3'- -GGUGCCuCC-CCGGUg-CGGagCCGCUG- -5'
31899	3'	-63.4	NC_006938.1	+	62755	0.7	0.191403
	Target:  5'- gCACGGAGGcGGCCACaCCggcUGGCaACa -3' miRNA:   3'- gGUGCCUCC-CCGGUGcGGa--GCCGcUG- -5'
31899	3'	-63.4	NC_006938.1	+	1886	0.71	0.17751
	Target:  5'- gCC-CGGAcaGGGGUCGCGCggCGGuCGGCa -3' miRNA:   3'- -GGuGCCU--CCCCGGUGCGgaGCC-GCUG- -5'
31899	3'	-63.4	NC_006938.1	+	19263	0.71	0.172645
	Target:  5'- uCCACuuuGGAGGGGacauugaucuCCACGCagguccgcaugauCUCGGCGAUc -3' miRNA:   3'- -GGUG---CCUCCCC----------GGUGCG-------------GAGCCGCUG- -5'
31899	3'	-63.4	NC_006938.1	+	24490	0.72	0.156342
	Target:  5'- gCACGGAGGaGGaCgACGCCUUcaaGGCGGa -3' miRNA:   3'- gGUGCCUCC-CC-GgUGCGGAG---CCGCUg -5'
31899	3'	-63.4	NC_006938.1	+	55509	1.09	0.000218
	Target:  5'- aCCACGGAGGGGCCACGCCUCGGCGACc -3' miRNA:   3'- -GGUGCCUCCCCGGUGCGGAGCCGCUG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home