miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
319 5' -55.9 AC_000010.1 + 10542 0.66 0.536708
Target:  5'- gUACUGgCACUCCCgucucgACCCAAG-CCuGCa -3'
miRNA:   3'- -GUGGUgGUGAGGG------UGGGUUCaGGuUG- -5'
319 5' -55.9 AC_000010.1 + 19592 0.66 0.536708
Target:  5'- aGCCAgCACUCCCAUguugccaguaCUguuauaguaauGAGUCCGAUg -3'
miRNA:   3'- gUGGUgGUGAGGGUG----------GG-----------UUCAGGUUG- -5'
319 5' -55.9 AC_000010.1 + 26107 0.66 0.536708
Target:  5'- aGCUACCAUcUCCGCuCCGGGUcggggggcCCAGCa -3'
miRNA:   3'- gUGGUGGUGaGGGUG-GGUUCA--------GGUUG- -5'
319 5' -55.9 AC_000010.1 + 10726 0.66 0.514795
Target:  5'- gCGCgaGCCACUCCCagGCCCGAGaacugagcguUCUAAa -3'
miRNA:   3'- -GUGg-UGGUGAGGG--UGGGUUC----------AGGUUg -5'
319 5' -55.9 AC_000010.1 + 24789 0.67 0.493255
Target:  5'- cUugCGCCGCUCU--UCCAAGUCUAGu -3'
miRNA:   3'- -GugGUGGUGAGGguGGGUUCAGGUUg -5'
319 5' -55.9 AC_000010.1 + 23780 0.67 0.472138
Target:  5'- cCACCACCACcUCUACCCucgaggauGAGgaggUCGACg -3'
miRNA:   3'- -GUGGUGGUGaGGGUGGG--------UUCa---GGUUG- -5'
319 5' -55.9 AC_000010.1 + 27995 0.67 0.461752
Target:  5'- aUACUACCACUCCCagaACCgGAGgUgAGCu -3'
miRNA:   3'- -GUGGUGGUGAGGG---UGGgUUCaGgUUG- -5'
319 5' -55.9 AC_000010.1 + 27045 0.67 0.460719
Target:  5'- cCACCACCguacuACUUCCucgagacGCCCAGG-CCGAa -3'
miRNA:   3'- -GUGGUGG-----UGAGGG-------UGGGUUCaGGUUg -5'
319 5' -55.9 AC_000010.1 + 10341 0.68 0.431341
Target:  5'- cCACCACCGcCUCCgguauCACCUggauGUCCAGg -3'
miRNA:   3'- -GUGGUGGU-GAGG-----GUGGGuu--CAGGUUg -5'
319 5' -55.9 AC_000010.1 + 25373 0.68 0.402134
Target:  5'- uGCUACCugUUCCGCCUGg--CCAACu -3'
miRNA:   3'- gUGGUGGugAGGGUGGGUucaGGUUG- -5'
319 5' -55.9 AC_000010.1 + 2264 0.69 0.383374
Target:  5'- uGCC-CCugUCCCGCCCAcuGGUUguAg -3'
miRNA:   3'- gUGGuGGugAGGGUGGGU--UCAGguUg -5'
319 5' -55.9 AC_000010.1 + 581 0.69 0.374215
Target:  5'- aCACCugCGCUUCCuguCCCAGGagauagucUCCAc- -3'
miRNA:   3'- -GUGGugGUGAGGGu--GGGUUC--------AGGUug -5'
319 5' -55.9 AC_000010.1 + 11094 0.69 0.365205
Target:  5'- gACgCGCCAgUCCCucgcccucuUCCAAGUCCAGa -3'
miRNA:   3'- gUG-GUGGUgAGGGu--------GGGUUCAGGUUg -5'
319 5' -55.9 AC_000010.1 + 8458 0.69 0.347639
Target:  5'- aCACCACCGCcUCCGCCCAaaAGgaaaAACa -3'
miRNA:   3'- -GUGGUGGUGaGGGUGGGU--UCagg-UUG- -5'
319 5' -55.9 AC_000010.1 + 13982 0.7 0.330685
Target:  5'- aCACCACCGCUCCU-CCUAgcacGGUUCGc- -3'
miRNA:   3'- -GUGGUGGUGAGGGuGGGU----UCAGGUug -5'
319 5' -55.9 AC_000010.1 + 10016 0.72 0.229135
Target:  5'- aGCCACC---CUCACCCAGGUgCAGCa -3'
miRNA:   3'- gUGGUGGugaGGGUGGGUUCAgGUUG- -5'
319 5' -55.9 AC_000010.1 + 13825 1.1 0.000378
Target:  5'- cCACCACCACUCCCACCCAAGUCCAACa -3'
miRNA:   3'- -GUGGUGGUGAGGGUGGGUUCAGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.