miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31903 3' -51.6 NC_006938.1 + 1058 0.66 0.903734
Target:  5'- cGGCGAGCGAGgUCGuCCGgauccagcACUcGUACg -3'
miRNA:   3'- aUCGUUCGCUCaAGC-GGU--------UGGcUAUG- -5'
31903 3' -51.6 NC_006938.1 + 13343 0.66 0.889248
Target:  5'- aUGGCGGuGuCGAcaaaGCCAGCCGGUGCc -3'
miRNA:   3'- -AUCGUU-C-GCUcaagCGGUUGGCUAUG- -5'
31903 3' -51.6 NC_006938.1 + 55265 0.66 0.881584
Target:  5'- aGGCAGaCGAGccggUCGCCGACCa---- -3'
miRNA:   3'- aUCGUUcGCUCa---AGCGGUUGGcuaug -5'
31903 3' -51.6 NC_006938.1 + 21433 0.66 0.874453
Target:  5'- gUAGcCGAGCGAGaacgccugggucacgUUGCCGACgaaGAUGCa -3'
miRNA:   3'- -AUC-GUUCGCUCa--------------AGCGGUUGg--CUAUG- -5'
31903 3' -51.6 NC_006938.1 + 63359 0.67 0.856983
Target:  5'- gGGCGgcGGCGAGccggUCGCCcACgCGGUGg -3'
miRNA:   3'- aUCGU--UCGCUCa---AGCGGuUG-GCUAUg -5'
31903 3' -51.6 NC_006938.1 + 13164 0.67 0.848271
Target:  5'- aUGGCAGGCcGGUUCGCac-CCGGcACc -3'
miRNA:   3'- -AUCGUUCGcUCAAGCGguuGGCUaUG- -5'
31903 3' -51.6 NC_006938.1 + 10551 0.68 0.801286
Target:  5'- cGGCGAGCGAGc-UGCCAAgCGuUAUg -3'
miRNA:   3'- aUCGUUCGCUCaaGCGGUUgGCuAUG- -5'
31903 3' -51.6 NC_006938.1 + 11107 0.68 0.791279
Target:  5'- uUGGCAggaGGCGAGUgguucUCGCCcgacACCGAc-- -3'
miRNA:   3'- -AUCGU---UCGCUCA-----AGCGGu---UGGCUaug -5'
31903 3' -51.6 NC_006938.1 + 30138 0.68 0.770747
Target:  5'- -cGCGGGC-AGUUgGaCCAGCUGGUACc -3'
miRNA:   3'- auCGUUCGcUCAAgC-GGUUGGCUAUG- -5'
31903 3' -51.6 NC_006938.1 + 36943 0.7 0.694748
Target:  5'- cGGCAGGCGAacuucUCGCCGcCCGuGUACu -3'
miRNA:   3'- aUCGUUCGCUca---AGCGGUuGGC-UAUG- -5'
31903 3' -51.6 NC_006938.1 + 15949 0.7 0.672266
Target:  5'- gGGCAggGGCGAGgcccgaUCGCCGACgCGGUc- -3'
miRNA:   3'- aUCGU--UCGCUCa-----AGCGGUUG-GCUAug -5'
31903 3' -51.6 NC_006938.1 + 8166 0.71 0.626911
Target:  5'- -uGC-GGCGAGcgCGCCGACUGcUGCa -3'
miRNA:   3'- auCGuUCGCUCaaGCGGUUGGCuAUG- -5'
31903 3' -51.6 NC_006938.1 + 26624 0.73 0.526081
Target:  5'- cGGCGAGa-AGUUCGCCuGCCGcUACa -3'
miRNA:   3'- aUCGUUCgcUCAAGCGGuUGGCuAUG- -5'
31903 3' -51.6 NC_006938.1 + 53878 0.74 0.452049
Target:  5'- gGGCAAuCGAGUUCuGCCAACCGccACc -3'
miRNA:   3'- aUCGUUcGCUCAAG-CGGUUGGCuaUG- -5'
31903 3' -51.6 NC_006938.1 + 55887 0.76 0.339859
Target:  5'- gAGCGAGCGAGggCuCCGGCCaGGUGCc -3'
miRNA:   3'- aUCGUUCGCUCaaGcGGUUGG-CUAUG- -5'
31903 3' -51.6 NC_006938.1 + 57500 1.07 0.003058
Target:  5'- cUAGCAAGCGAGUUCGCCAACCGAUACc -3'
miRNA:   3'- -AUCGUUCGCUCAAGCGGUUGGCUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.