miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31904 3' -56.5 NC_006938.1 + 52950 0.66 0.704318
Target:  5'- --aCGUCGaGG-CUCCCGaggguggugcauCGACCAGCu -3'
miRNA:   3'- cgaGCAGC-CCaGAGGGU------------GCUGGUUGc -5'
31904 3' -56.5 NC_006938.1 + 22760 0.67 0.692826
Target:  5'- uCUUGgcaCGGGcCUCCUugGACCGcuggaggACGg -3'
miRNA:   3'- cGAGCa--GCCCaGAGGGugCUGGU-------UGC- -5'
31904 3' -56.5 NC_006938.1 + 12888 0.7 0.474423
Target:  5'- cGCUCGcCGGGgccUCUCCCGCcuccuugGGCuCGACa -3'
miRNA:   3'- -CGAGCaGCCC---AGAGGGUG-------CUG-GUUGc -5'
31904 3' -56.5 NC_006938.1 + 9603 0.73 0.357922
Target:  5'- -gUCGUCGGGgcugaCUCCCGCugGACCuuCGa -3'
miRNA:   3'- cgAGCAGCCCa----GAGGGUG--CUGGuuGC- -5'
31904 3' -56.5 NC_006938.1 + 52642 0.75 0.262336
Target:  5'- uCUCGUCGGGUUUCgaGCGGCgCAACa -3'
miRNA:   3'- cGAGCAGCCCAGAGggUGCUG-GUUGc -5'
31904 3' -56.5 NC_006938.1 + 37479 0.77 0.198599
Target:  5'- uGCUUGcCGGGgacucCUCCgCGCGACCAGCu -3'
miRNA:   3'- -CGAGCaGCCCa----GAGG-GUGCUGGUUGc -5'
31904 3' -56.5 NC_006938.1 + 58195 1.1 0.000912
Target:  5'- cGCUCGUCGGGUCUCCCACGACCAACGu -3'
miRNA:   3'- -CGAGCAGCCCAGAGGGUGCUGGUUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.