miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31905 5' -61.7 NC_006938.1 + 34936 0.66 0.400665
Target:  5'- uGGUCGAGCacCCAGCGgGCcucCUUCAGa -3'
miRNA:   3'- -CCGGCUCGa-GGUCGCgCGac-GGAGUU- -5'
31905 5' -61.7 NC_006938.1 + 47179 0.66 0.391859
Target:  5'- cGGCuCGAGgUUCGGCgagauguacaGCGCgGCCUCu- -3'
miRNA:   3'- -CCG-GCUCgAGGUCG----------CGCGaCGGAGuu -5'
31905 5' -61.7 NC_006938.1 + 42853 0.66 0.391859
Target:  5'- cGGUCGAGCcCCAucuGuCGCGCgGCCUg-- -3'
miRNA:   3'- -CCGGCUCGaGGU---C-GCGCGaCGGAguu -5'
31905 5' -61.7 NC_006938.1 + 26034 0.66 0.37463
Target:  5'- cGGCCucguccAGCUugCCAGCG-GCggcgGCCUCGAg -3'
miRNA:   3'- -CCGGc-----UCGA--GGUCGCgCGa---CGGAGUU- -5'
31905 5' -61.7 NC_006938.1 + 22640 0.66 0.373782
Target:  5'- aGCCGAGCUUgGGCuugcgcugauugaGCGCcGCgUCGAu -3'
miRNA:   3'- cCGGCUCGAGgUCG-------------CGCGaCGgAGUU- -5'
31905 5' -61.7 NC_006938.1 + 19932 0.67 0.333853
Target:  5'- --aCGGGCUCCAGUGUG--GCCUCGu -3'
miRNA:   3'- ccgGCUCGAGGUCGCGCgaCGGAGUu -5'
31905 5' -61.7 NC_006938.1 + 26530 0.68 0.306564
Target:  5'- gGGCCGGGUcaugUCCcGCGCGCcgguccggcugucccUGaCCUCGGa -3'
miRNA:   3'- -CCGGCUCG----AGGuCGCGCG---------------AC-GGAGUU- -5'
31905 5' -61.7 NC_006938.1 + 7178 0.68 0.30364
Target:  5'- uGGCCGAGCUCacaagagAGCGCGUccGCgUUGAc -3'
miRNA:   3'- -CCGGCUCGAGg------UCGCGCGa-CGgAGUU- -5'
31905 5' -61.7 NC_006938.1 + 21 0.68 0.30364
Target:  5'- aGCCGGGUgugucuUCCAGgGCaGCUGCCa--- -3'
miRNA:   3'- cCGGCUCG------AGGUCgCG-CGACGGaguu -5'
31905 5' -61.7 NC_006938.1 + 4143 0.68 0.296422
Target:  5'- cGGCCGGG-UCCGGCGgCGCca-CUCGAa -3'
miRNA:   3'- -CCGGCUCgAGGUCGC-GCGacgGAGUU- -5'
31905 5' -61.7 NC_006938.1 + 4211 0.68 0.289339
Target:  5'- cGCCGAGCUCCccaucgucaaCGUGCUccGCCUCu- -3'
miRNA:   3'- cCGGCUCGAGGuc--------GCGCGA--CGGAGuu -5'
31905 5' -61.7 NC_006938.1 + 7221 0.69 0.237417
Target:  5'- gGGCCugGAGCUCCGGCGCaacacaauGCacgGCCgCAAu -3'
miRNA:   3'- -CCGG--CUCGAGGUCGCG--------CGa--CGGaGUU- -5'
31905 5' -61.7 NC_006938.1 + 23706 0.72 0.1528
Target:  5'- uGGCCGAgauGCUCgAGCGCGCccugaguggUGCCgCGAa -3'
miRNA:   3'- -CCGGCU---CGAGgUCGCGCG---------ACGGaGUU- -5'
31905 5' -61.7 NC_006938.1 + 58986 1.07 0.000304
Target:  5'- aGGCCGAGCUCCAGCGCGCUGCCUCAAu -3'
miRNA:   3'- -CCGGCUCGAGGUCGCGCGACGGAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.