miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31906 3' -51.2 NC_006938.1 + 59357 0.66 0.94924
Target:  5'- aCCGGaGguGgcuCUGgcacGACCAUCgUCGGu -3'
miRNA:   3'- -GGUC-CguCaauGACa---CUGGUAG-AGCC- -5'
31906 3' -51.2 NC_006938.1 + 58672 0.66 0.94924
Target:  5'- uCCAGGCGGUgACUGgucucACC-UCUCc- -3'
miRNA:   3'- -GGUCCGUCAaUGACac---UGGuAGAGcc -5'
31906 3' -51.2 NC_006938.1 + 51211 0.66 0.928773
Target:  5'- -uGGGCuacuccugACUGUcauugcgacGGCCAUCUCGGc -3'
miRNA:   3'- ggUCCGucaa----UGACA---------CUGGUAGAGCC- -5'
31906 3' -51.2 NC_006938.1 + 7062 0.66 0.922956
Target:  5'- cCCAGGCAGUUugaaauccagugACcccGACCGUCU-GGu -3'
miRNA:   3'- -GGUCCGUCAA------------UGacaCUGGUAGAgCC- -5'
31906 3' -51.2 NC_006938.1 + 3092 0.66 0.922359
Target:  5'- aUCAGGUAcuguauuGUUAUUGcuUGACaAUCUCGGa -3'
miRNA:   3'- -GGUCCGU-------CAAUGAC--ACUGgUAGAGCC- -5'
31906 3' -51.2 NC_006938.1 + 52995 0.67 0.910482
Target:  5'- uCCGGauGguGUUGCUGgGACCGUC-CGu -3'
miRNA:   3'- -GGUC--CguCAAUGACaCUGGUAGaGCc -5'
31906 3' -51.2 NC_006938.1 + 55571 0.67 0.889698
Target:  5'- aCGGGCGGgaGCUG-GGCCGggUCGc -3'
miRNA:   3'- gGUCCGUCaaUGACaCUGGUagAGCc -5'
31906 3' -51.2 NC_006938.1 + 49959 0.67 0.888964
Target:  5'- aCCAGGCAGUagugaccuccacUcCUGUcgacuccGGCCGcgCUCGGu -3'
miRNA:   3'- -GGUCCGUCA------------AuGACA-------CUGGUa-GAGCC- -5'
31906 3' -51.2 NC_006938.1 + 46644 0.68 0.86571
Target:  5'- aCAGGUGGUggcCUGgGACUgaaguggGUCUCGGa -3'
miRNA:   3'- gGUCCGUCAau-GACaCUGG-------UAGAGCC- -5'
31906 3' -51.2 NC_006938.1 + 41032 0.71 0.743493
Target:  5'- uCCAGGC-GUcGCUGUu-CgCGUCUCGGg -3'
miRNA:   3'- -GGUCCGuCAaUGACAcuG-GUAGAGCC- -5'
31906 3' -51.2 NC_006938.1 + 59112 1.14 0.001582
Target:  5'- cCCAGGCAGUUACUGUGACCAUCUCGGg -3'
miRNA:   3'- -GGUCCGUCAAUGACACUGGUAGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.