miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31906 5' -62.9 NC_006938.1 + 33652 0.66 0.376907
Target:  5'- uACCGCuGUCUGUCagcGGgAGgCGGAGg -3'
miRNA:   3'- cUGGCG-CGGACAGga-CCgUCgGCCUC- -5'
31906 5' -62.9 NC_006938.1 + 56102 0.66 0.368606
Target:  5'- cGCCGCGCCUaUCUggacucugaUGGCGGCCu--- -3'
miRNA:   3'- cUGGCGCGGAcAGG---------ACCGUCGGccuc -5'
31906 5' -62.9 NC_006938.1 + 31233 0.66 0.367783
Target:  5'- aACCaGCGCUUGcUCUUGGUgaucagauccuccAGCUGGGGa -3'
miRNA:   3'- cUGG-CGCGGAC-AGGACCG-------------UCGGCCUC- -5'
31906 5' -62.9 NC_006938.1 + 43894 0.66 0.366141
Target:  5'- aGACCGUgucggugucgauucGCCgaaGUCCuUGGCcuucuGCUGGAGg -3'
miRNA:   3'- -CUGGCG--------------CGGa--CAGG-ACCGu----CGGCCUC- -5'
31906 5' -62.9 NC_006938.1 + 13140 0.66 0.359621
Target:  5'- aGCCGCGCCUccgauaaGcCCaagGGCAGagCGGAGc -3'
miRNA:   3'- cUGGCGCGGA-------CaGGa--CCGUCg-GCCUC- -5'
31906 5' -62.9 NC_006938.1 + 15536 0.67 0.329015
Target:  5'- -uCCGCGCCgcccgagGUCUUGucgaGCGugauGCCGGAGg -3'
miRNA:   3'- cuGGCGCGGa------CAGGAC----CGU----CGGCCUC- -5'
31906 5' -62.9 NC_006938.1 + 35185 0.67 0.292653
Target:  5'- uGACCGUGUag-----GGCGGCCGGAGg -3'
miRNA:   3'- -CUGGCGCGgacaggaCCGUCGGCCUC- -5'
31906 5' -62.9 NC_006938.1 + 2080 0.68 0.259508
Target:  5'- cGACUGCGCCgagcaggugGUCUuugUGG-AGCCGGAc -3'
miRNA:   3'- -CUGGCGCGGa--------CAGG---ACCgUCGGCCUc -5'
31906 5' -62.9 NC_006938.1 + 43417 0.68 0.259508
Target:  5'- aGACCugguGCGCCUcGUCCcagcgcUGGUuGUCGGAGg -3'
miRNA:   3'- -CUGG----CGCGGA-CAGG------ACCGuCGGCCUC- -5'
31906 5' -62.9 NC_006938.1 + 58367 0.68 0.253258
Target:  5'- gGGCCGCGCCccucGUCCUGGaCuGaacaGGAGa -3'
miRNA:   3'- -CUGGCGCGGa---CAGGACC-GuCgg--CCUC- -5'
31906 5' -62.9 NC_006938.1 + 50368 0.7 0.202459
Target:  5'- gGACCggacGCGCCUGUCCcacucccggUGGU-GCCGGGu -3'
miRNA:   3'- -CUGG----CGCGGACAGG---------ACCGuCGGCCUc -5'
31906 5' -62.9 NC_006938.1 + 23122 0.72 0.144816
Target:  5'- aGCCGCGCCUGUCCaGGgAuCCaGAGg -3'
miRNA:   3'- cUGGCGCGGACAGGaCCgUcGGcCUC- -5'
31906 5' -62.9 NC_006938.1 + 59148 1.08 0.00025
Target:  5'- aGACCGCGCCUGUCCUGGCAGCCGGAGa -3'
miRNA:   3'- -CUGGCGCGGACAGGACCGUCGGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.