miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31907 3' -60.7 NC_006938.1 + 29133 0.66 0.442936
Target:  5'- aGCCcaaGGAGGggcggcuggucUGGCUCcGGCACGAUg-- -3'
miRNA:   3'- -UGG---CCUCC-----------ACCGAGaCCGUGCUGgua -5'
31907 3' -60.7 NC_006938.1 + 26709 0.66 0.424298
Target:  5'- aACCGGAacgagaccGGUGGCUaCgucGGCAUcGCCAg -3'
miRNA:   3'- -UGGCCU--------CCACCGA-Ga--CCGUGcUGGUa -5'
31907 3' -60.7 NC_006938.1 + 29215 0.67 0.406138
Target:  5'- uGCCuc-GGUGGCUC-GGCGUGACCAUc -3'
miRNA:   3'- -UGGccuCCACCGAGaCCGUGCUGGUA- -5'
31907 3' -60.7 NC_006938.1 + 46515 0.67 0.406138
Target:  5'- gGCCGGAGuGUGaCguucguucagCUGGaCACGACCGc -3'
miRNA:   3'- -UGGCCUC-CACcGa---------GACC-GUGCUGGUa -5'
31907 3' -60.7 NC_006938.1 + 9041 0.67 0.397243
Target:  5'- gAUgGGAGGUGGCaUC-GGCuACGACUu- -3'
miRNA:   3'- -UGgCCUCCACCG-AGaCCG-UGCUGGua -5'
31907 3' -60.7 NC_006938.1 + 47800 0.67 0.388474
Target:  5'- cACCGGccAGGUacauGUcgUCUGGCGCGACCc- -3'
miRNA:   3'- -UGGCC--UCCAc---CG--AGACCGUGCUGGua -5'
31907 3' -60.7 NC_006938.1 + 46360 0.7 0.259674
Target:  5'- -gCGGAGGUGGCagaccagCUGGCccaccaugcCGACCAUc -3'
miRNA:   3'- ugGCCUCCACCGa------GACCGu--------GCUGGUA- -5'
31907 3' -60.7 NC_006938.1 + 23024 0.7 0.259674
Target:  5'- aGCUGGAGGUGGagcacgUCUGGCACucCUAc -3'
miRNA:   3'- -UGGCCUCCACCg-----AGACCGUGcuGGUa -5'
31907 3' -60.7 NC_006938.1 + 59215 0.71 0.229066
Target:  5'- uGCUGGAGGcGGUUCUGGCgGCGGuggguCCAg -3'
miRNA:   3'- -UGGCCUCCaCCGAGACCG-UGCU-----GGUa -5'
31907 3' -60.7 NC_006938.1 + 18514 0.72 0.186474
Target:  5'- gGCCGGAcgacGGUGGcCUCUGG-GCGGCCc- -3'
miRNA:   3'- -UGGCCU----CCACC-GAGACCgUGCUGGua -5'
31907 3' -60.7 NC_006938.1 + 19322 0.72 0.176975
Target:  5'- gGCCGGAGGUGGCacgguucuUCaUGGaCGCGGCgGa -3'
miRNA:   3'- -UGGCCUCCACCG--------AG-ACC-GUGCUGgUa -5'
31907 3' -60.7 NC_006938.1 + 37946 0.75 0.112258
Target:  5'- -gUGGAGGcgucGGCUCUGGCGCGAgCAa -3'
miRNA:   3'- ugGCCUCCa---CCGAGACCGUGCUgGUa -5'
31907 3' -60.7 NC_006938.1 + 59356 1.04 0.000689
Target:  5'- cACCGGAGGUGGCUCUGGCACGACCAUc -3'
miRNA:   3'- -UGGCCUCCACCGAGACCGUGCUGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.