Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31907 | 5' | -56 | NC_006938.1 | + | 51006 | 0.66 | 0.741541 |
|
Target: 5'- aGGCaGUCGGCGCgUUCgacgcugccaccgggGCCUCCGc -3' miRNA: 3'- gCUGcCAGUCGUGaGAGaa-------------CGGAGGC- -5' |
|||||||
| 31907 | 5' | -56 | NC_006938.1 | + | 36123 | 0.66 | 0.72392 |
|
Target: 5'- gGAUGGUCAGCGCUU---UGCgaUCGg -3' miRNA: 3'- gCUGCCAGUCGUGAGagaACGgaGGC- -5' |
|||||||
| 31907 | 5' | -56 | NC_006938.1 | + | 45307 | 0.66 | 0.702868 |
|
Target: 5'- gCGGCGGUCAccucGCAgUggccCUCgUGCCUCgCGa -3' miRNA: 3'- -GCUGCCAGU----CGUgA----GAGaACGGAG-GC- -5' |
|||||||
| 31907 | 5' | -56 | NC_006938.1 | + | 9684 | 0.67 | 0.68155 |
|
Target: 5'- uGGCGGUUGGCgagaACUCgaUUGCC-CCGg -3' miRNA: 3'- gCUGCCAGUCG----UGAGagAACGGaGGC- -5' |
|||||||
| 31907 | 5' | -56 | NC_006938.1 | + | 55083 | 0.67 | 0.670818 |
|
Target: 5'- aCGACuGGgccucUCGGCGCUCg--UGCCagUCCGg -3' miRNA: 3'- -GCUG-CC-----AGUCGUGAGagaACGG--AGGC- -5' |
|||||||
| 31907 | 5' | -56 | NC_006938.1 | + | 51233 | 0.68 | 0.627636 |
|
Target: 5'- gCGACGGccaucUCGGCGCUCaUC--GCCUUCa -3' miRNA: 3'- -GCUGCC-----AGUCGUGAG-AGaaCGGAGGc -5' |
|||||||
| 31907 | 5' | -56 | NC_006938.1 | + | 43611 | 0.69 | 0.531512 |
|
Target: 5'- gGACGGUCcuccaGGCGCUCcCUggaGuCCUCCa -3' miRNA: 3'- gCUGCCAG-----UCGUGAGaGAa--C-GGAGGc -5' |
|||||||
| 31907 | 5' | -56 | NC_006938.1 | + | 59371 | 0.7 | 0.470405 |
|
Target: 5'- uCGGCGGUCAGCAgggUCUCgaugucggaGCCgUCCGc -3' miRNA: 3'- -GCUGCCAGUCGUg--AGAGaa-------CGG-AGGC- -5' |
|||||||
| 31907 | 5' | -56 | NC_006938.1 | + | 59390 | 1.09 | 0.001144 |
|
Target: 5'- cCGACGGUCAGCACUCUCUUGCCUCCGu -3' miRNA: 3'- -GCUGCCAGUCGUGAGAGAACGGAGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home