miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31907 5' -56 NC_006938.1 + 51006 0.66 0.741541
Target:  5'- aGGCaGUCGGCGCgUUCgacgcugccaccgggGCCUCCGc -3'
miRNA:   3'- gCUGcCAGUCGUGaGAGaa-------------CGGAGGC- -5'
31907 5' -56 NC_006938.1 + 36123 0.66 0.72392
Target:  5'- gGAUGGUCAGCGCUU---UGCgaUCGg -3'
miRNA:   3'- gCUGCCAGUCGUGAGagaACGgaGGC- -5'
31907 5' -56 NC_006938.1 + 45307 0.66 0.702868
Target:  5'- gCGGCGGUCAccucGCAgUggccCUCgUGCCUCgCGa -3'
miRNA:   3'- -GCUGCCAGU----CGUgA----GAGaACGGAG-GC- -5'
31907 5' -56 NC_006938.1 + 9684 0.67 0.68155
Target:  5'- uGGCGGUUGGCgagaACUCgaUUGCC-CCGg -3'
miRNA:   3'- gCUGCCAGUCG----UGAGagAACGGaGGC- -5'
31907 5' -56 NC_006938.1 + 55083 0.67 0.670818
Target:  5'- aCGACuGGgccucUCGGCGCUCg--UGCCagUCCGg -3'
miRNA:   3'- -GCUG-CC-----AGUCGUGAGagaACGG--AGGC- -5'
31907 5' -56 NC_006938.1 + 51233 0.68 0.627636
Target:  5'- gCGACGGccaucUCGGCGCUCaUC--GCCUUCa -3'
miRNA:   3'- -GCUGCC-----AGUCGUGAG-AGaaCGGAGGc -5'
31907 5' -56 NC_006938.1 + 43611 0.69 0.531512
Target:  5'- gGACGGUCcuccaGGCGCUCcCUggaGuCCUCCa -3'
miRNA:   3'- gCUGCCAG-----UCGUGAGaGAa--C-GGAGGc -5'
31907 5' -56 NC_006938.1 + 59371 0.7 0.470405
Target:  5'- uCGGCGGUCAGCAgggUCUCgaugucggaGCCgUCCGc -3'
miRNA:   3'- -GCUGCCAGUCGUg--AGAGaa-------CGG-AGGC- -5'
31907 5' -56 NC_006938.1 + 59390 1.09 0.001144
Target:  5'- cCGACGGUCAGCACUCUCUUGCCUCCGu -3'
miRNA:   3'- -GCUGCCAGUCGUGAGAGAACGGAGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.