Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31908 | 3' | -54.6 | NC_006938.1 | + | 41992 | 0.69 | 0.636471 |
Target: 5'- -gGGCGaCGUcgGCACGGCGAACcUUGa -3' miRNA: 3'- ugCCGC-GCGa-UGUGUCGCUUGaAGCg -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 17826 | 0.7 | 0.559165 |
Target: 5'- gGCGGCccGCGcCUAUggcaugcggaaggACAGCGAGCUcggcUCGUa -3' miRNA: 3'- -UGCCG--CGC-GAUG-------------UGUCGCUUGA----AGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 20741 | 0.7 | 0.538851 |
Target: 5'- -aGGUGuCGCUgauggaggcggACAaGGUGAACUUCGCg -3' miRNA: 3'- ugCCGC-GCGA-----------UGUgUCGCUUGAAGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 55943 | 0.7 | 0.56024 |
Target: 5'- -gGGC-CGCcuugccagugUACGCGGCGAACUUCa- -3' miRNA: 3'- ugCCGcGCG----------AUGUGUCGCUUGAAGcg -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 10535 | 0.71 | 0.48674 |
Target: 5'- gUGGUGCcagaCUGCGCGGCGAGCga-GCu -3' miRNA: 3'- uGCCGCGc---GAUGUGUCGCUUGaagCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 55405 | 0.71 | 0.496982 |
Target: 5'- uCGGCGCGCUcgccGCagGCGGCcuGGGCUucUCGCc -3' miRNA: 3'- uGCCGCGCGA----UG--UGUCG--CUUGA--AGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 11078 | 0.71 | 0.50732 |
Target: 5'- uCGGCGCGCUGgaGCGGC--ACaUCGCc -3' miRNA: 3'- uGCCGCGCGAUg-UGUCGcuUGaAGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 50761 | 0.73 | 0.381648 |
Target: 5'- cCGGgGCaCUGCGCGGCGAcgaGCUcCGCu -3' miRNA: 3'- uGCCgCGcGAUGUGUCGCU---UGAaGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 17748 | 0.74 | 0.331058 |
Target: 5'- uCGGCGgGCUGCGCGGaGAACgUgGCa -3' miRNA: 3'- uGCCGCgCGAUGUGUCgCUUGaAgCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 52434 | 0.74 | 0.347358 |
Target: 5'- cCGGCcCGUg--ACAGUGAACUUCGCg -3' miRNA: 3'- uGCCGcGCGaugUGUCGCUUGAAGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 9815 | 0.74 | 0.331058 |
Target: 5'- aGCaGCGCGUaugGCGCGGCGAGgUUCaGCa -3' miRNA: 3'- -UGcCGCGCGa--UGUGUCGCUUgAAG-CG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 8472 | 0.75 | 0.28558 |
Target: 5'- uCGGCGCGgaUACGCGGUGGGgUUUGCc -3' miRNA: 3'- uGCCGCGCg-AUGUGUCGCUUgAAGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 62865 | 0.78 | 0.193582 |
Target: 5'- gACGGUGUGggaggUACACAGCGAACUUCa- -3' miRNA: 3'- -UGCCGCGCg----AUGUGUCGCUUGAAGcg -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 62195 | 1.1 | 0.001106 |
Target: 5'- cACGGCGCGCUACACAGCGAACUUCGCc -3' miRNA: 3'- -UGCCGCGCGAUGUGUCGCUUGAAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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