miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31909 3' -59.4 NC_006938.1 + 10228 0.66 0.520613
Target:  5'- cGC-CCaGGGCUUCGugGacaGCGcGGUc -3'
miRNA:   3'- aCGaGGaCCCGAAGCugCg--CGU-CCAc -5'
31909 3' -59.4 NC_006938.1 + 35961 0.66 0.510408
Target:  5'- cGCUCCUGuuguuccaGCgccgCGugGCGCuguGGGUGu -3'
miRNA:   3'- aCGAGGACc-------CGaa--GCugCGCG---UCCAC- -5'
31909 3' -59.4 NC_006938.1 + 51725 0.67 0.451125
Target:  5'- gGCUUCUccgaGGGCUUCGAUGCcCAGa-- -3'
miRNA:   3'- aCGAGGA----CCCGAAGCUGCGcGUCcac -5'
31909 3' -59.4 NC_006938.1 + 49843 0.67 0.441611
Target:  5'- cGCUCgUGGuGCUgacaGACGagGUAGGUGu -3'
miRNA:   3'- aCGAGgACC-CGAag--CUGCg-CGUCCAC- -5'
31909 3' -59.4 NC_006938.1 + 60589 0.68 0.395818
Target:  5'- cGCUCCUGGGCUUCucACGCaauGUcaGUGg -3'
miRNA:   3'- aCGAGGACCCGAAGc-UGCG---CGucCAC- -5'
31909 3' -59.4 NC_006938.1 + 28809 0.69 0.345078
Target:  5'- gGCagUCC-GGGCcgCGACGCGCAcGGUc -3'
miRNA:   3'- aCG--AGGaCCCGaaGCUGCGCGU-CCAc -5'
31909 3' -59.4 NC_006938.1 + 58549 0.7 0.313936
Target:  5'- -uCUCUUGGGUccgUCgGACGCGCAucGGUGg -3'
miRNA:   3'- acGAGGACCCGa--AG-CUGCGCGU--CCAC- -5'
31909 3' -59.4 NC_006938.1 + 46178 0.71 0.271293
Target:  5'- aGCcCCUGGaGUUUCcGCGCGCGGGc- -3'
miRNA:   3'- aCGaGGACC-CGAAGcUGCGCGUCCac -5'
31909 3' -59.4 NC_006938.1 + 33937 0.71 0.271293
Target:  5'- gGCUUCUGGuGCcagCGG-GCGCGGGUGc -3'
miRNA:   3'- aCGAGGACC-CGaa-GCUgCGCGUCCAC- -5'
31909 3' -59.4 NC_006938.1 + 23895 0.74 0.171016
Target:  5'- gGCUUCaaGGGCgugaUCGACGCGCGGGc- -3'
miRNA:   3'- aCGAGGa-CCCGa---AGCUGCGCGUCCac -5'
31909 3' -59.4 NC_006938.1 + 62283 1.08 0.000471
Target:  5'- cUGCUCCUGGGCUUCGACGCGCAGGUGg -3'
miRNA:   3'- -ACGAGGACCCGAAGCUGCGCGUCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.