miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31909 5' -55.7 NC_006938.1 + 38331 0.66 0.702474
Target:  5'- aGCAGC--UCACUGAaGAGAagGCCCGu -3'
miRNA:   3'- gUGUCGacAGUGACUgCUCU--CGGGUu -5'
31909 5' -55.7 NC_006938.1 + 21831 0.66 0.680608
Target:  5'- uGCgAGCUGguUCGCUG-CGAGAuCCCAGa -3'
miRNA:   3'- gUG-UCGAC--AGUGACuGCUCUcGGGUU- -5'
31909 5' -55.7 NC_006938.1 + 2645 0.66 0.647486
Target:  5'- uGCGGCcucCACggcGACGAGGGUCCGAa -3'
miRNA:   3'- gUGUCGacaGUGa--CUGCUCUCGGGUU- -5'
31909 5' -55.7 NC_006938.1 + 47725 0.67 0.636402
Target:  5'- gCGCGGUUGcCACgGACGAGA-UCCAGa -3'
miRNA:   3'- -GUGUCGACaGUGaCUGCUCUcGGGUU- -5'
31909 5' -55.7 NC_006938.1 + 25913 0.67 0.625315
Target:  5'- gUACAuGCUGUCAUaUGaccacGCGGGAGUCCAc -3'
miRNA:   3'- -GUGU-CGACAGUG-AC-----UGCUCUCGGGUu -5'
31909 5' -55.7 NC_006938.1 + 6767 0.67 0.614233
Target:  5'- cCAgGGCUuccaugacaugGUCGCUGGCGGcGAGgCCAAg -3'
miRNA:   3'- -GUgUCGA-----------CAGUGACUGCU-CUCgGGUU- -5'
31909 5' -55.7 NC_006938.1 + 20738 0.67 0.59654
Target:  5'- gGCAGgUGUCGCUGAUGgaggcGGAcaaggugaacuucgcGCCCAAg -3'
miRNA:   3'- gUGUCgACAGUGACUGC-----UCU---------------CGGGUU- -5'
31909 5' -55.7 NC_006938.1 + 12310 0.68 0.581122
Target:  5'- gUugAGCUgGUCGCUGaagGCGAuGAGCgCCGAg -3'
miRNA:   3'- -GugUCGA-CAGUGAC---UGCU-CUCG-GGUU- -5'
31909 5' -55.7 NC_006938.1 + 46451 0.69 0.505722
Target:  5'- gCGCGGgaGUCACUcGAUGAcagcGGCCCAGg -3'
miRNA:   3'- -GUGUCgaCAGUGA-CUGCUc---UCGGGUU- -5'
31909 5' -55.7 NC_006938.1 + 43868 0.73 0.275189
Target:  5'- aCACGGCUGUCGCUGAUGcugucAGCCUc- -3'
miRNA:   3'- -GUGUCGACAGUGACUGCuc---UCGGGuu -5'
31909 5' -55.7 NC_006938.1 + 62317 1.06 0.001294
Target:  5'- aCACAGCUGUCACUGACGAGAGCCCAAa -3'
miRNA:   3'- -GUGUCGACAGUGACUGCUCUCGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.