miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3191 5' -50.4 NC_001502.1 + 2531 0.66 0.322317
Target:  5'- aUGGgacAGcCACUAGUCAuuCuGGCCCCCc -3'
miRNA:   3'- cAUC---UCcGUGAUCAGUuuG-UUGGGGG- -5'
3191 5' -50.4 NC_001502.1 + 154 0.66 0.303255
Target:  5'- gGUGGucccuGGGCAggGGUCuccaaaucccGGACgAGCCCCCa -3'
miRNA:   3'- -CAUC-----UCCGUgaUCAG----------UUUG-UUGGGGG- -5'
3191 5' -50.4 NC_001502.1 + 2351 0.68 0.220913
Target:  5'- -aAG-GGC-UUAGUCAAaucugGCAACCCCa -3'
miRNA:   3'- caUCuCCGuGAUCAGUU-----UGUUGGGGg -5'
3191 5' -50.4 NC_001502.1 + 2171 0.7 0.147998
Target:  5'- -gGGAGGUcagGGUCAGG-AGCCCCCc -3'
miRNA:   3'- caUCUCCGugaUCAGUUUgUUGGGGG- -5'
3191 5' -50.4 NC_001502.1 + 1049 0.72 0.10475
Target:  5'- -cGGGGGguCUucuguaaguaGGUCGAugaGCGGCCCCCc -3'
miRNA:   3'- caUCUCCguGA----------UCAGUU---UGUUGGGGG- -5'
3191 5' -50.4 NC_001502.1 + 2566 1.12 0.000068
Target:  5'- aGUAGAGGCACUAGUCAAACAACCCCCc -3'
miRNA:   3'- -CAUCUCCGUGAUCAGUUUGUUGGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.