miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31910 3' -65 NC_006938.1 + 47819 0.66 0.300647
Target:  5'- cGG-CUCGGGUgacGCGGAcaucgccuacacaGGCGGCuCGCu -3'
miRNA:   3'- uCCgGAGCCCG---UGCCU-------------CCGCCG-GUGu -5'
31910 3' -65 NC_006938.1 + 47756 0.66 0.294401
Target:  5'- uGGCCUCGuGC-UGGAGGCcucuccuccGGCCGgAg -3'
miRNA:   3'- uCCGGAGCcCGuGCCUCCG---------CCGGUgU- -5'
31910 3' -65 NC_006938.1 + 20830 0.66 0.287581
Target:  5'- -cGCCgcgCGGGCaagacacaGCGcGAGGUGGCC-CGa -3'
miRNA:   3'- ucCGGa--GCCCG--------UGC-CUCCGCCGGuGU- -5'
31910 3' -65 NC_006938.1 + 39008 0.66 0.278902
Target:  5'- uGGCCUCuGGcagcGCGCGGcGGCGGaccugucucacgauCCACGu -3'
miRNA:   3'- uCCGGAG-CC----CGUGCCuCCGCC--------------GGUGU- -5'
31910 3' -65 NC_006938.1 + 26034 0.66 0.274316
Target:  5'- cGGCCUCGuccaGCuugccaGCGGcGGCGGCCuCGa -3'
miRNA:   3'- uCCGGAGCc---CG------UGCCuCCGCCGGuGU- -5'
31910 3' -65 NC_006938.1 + 3767 0.67 0.249261
Target:  5'- -cGCUcgUCGGGCGCGGuGGCaagGGUgGCAu -3'
miRNA:   3'- ucCGG--AGCCCGUGCCuCCG---CCGgUGU- -5'
31910 3' -65 NC_006938.1 + 34804 0.67 0.2433
Target:  5'- gGGGCCuUCGGGCugcagcagacACuGAGGCacaucGCCACGu -3'
miRNA:   3'- -UCCGG-AGCCCG----------UGcCUCCGc----CGGUGU- -5'
31910 3' -65 NC_006938.1 + 45924 0.67 0.237459
Target:  5'- cGGaGCCUCGGcgGCGGAGaCGGCC-CAg -3'
miRNA:   3'- -UC-CGGAGCCcgUGCCUCcGCCGGuGU- -5'
31910 3' -65 NC_006938.1 + 33943 0.68 0.220636
Target:  5'- uGGuGCCagCGGGCGCGGGuGCaGGCCGg- -3'
miRNA:   3'- -UC-CGGa-GCCCGUGCCUcCG-CCGGUgu -5'
31910 3' -65 NC_006938.1 + 44029 0.69 0.167442
Target:  5'- uGGCCUCGGcGggaAUGGAGGUGGCaACc -3'
miRNA:   3'- uCCGGAGCC-Cg--UGCCUCCGCCGgUGu -5'
31910 3' -65 NC_006938.1 + 52380 0.71 0.126035
Target:  5'- cAGGCCUCGGcGUcgaGGAGGaUGGCgGCGg -3'
miRNA:   3'- -UCCGGAGCC-CGug-CCUCC-GCCGgUGU- -5'
31910 3' -65 NC_006938.1 + 37784 0.73 0.087039
Target:  5'- cGGGCCUCGcuCGgGGAGGUGGCC-CAg -3'
miRNA:   3'- -UCCGGAGCccGUgCCUCCGCCGGuGU- -5'
31910 3' -65 NC_006938.1 + 62745 1.07 0.000193
Target:  5'- gAGGCCUCGGGCACGGAGGCGGCCACAc -3'
miRNA:   3'- -UCCGGAGCCCGUGCCUCCGCCGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.