miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31910 5' -57.2 NC_006938.1 + 15859 0.66 0.621626
Target:  5'- cGCGCUGaGGACCUucaguccguuguuggCCGCGUUGGUg- -3'
miRNA:   3'- uUGUGACcUCUGGA---------------GGCGUAGCCGuc -5'
31910 5' -57.2 NC_006938.1 + 17208 0.66 0.595528
Target:  5'- --aGCUGGucugccACCUCCGCGagGGCAa -3'
miRNA:   3'- uugUGACCuc----UGGAGGCGUagCCGUc -5'
31910 5' -57.2 NC_006938.1 + 26363 0.67 0.567455
Target:  5'- -cCACUGGGGACCggUCCGUggagcauaugcccauGggagCGGCGGc -3'
miRNA:   3'- uuGUGACCUCUGG--AGGCG---------------Ua---GCCGUC- -5'
31910 5' -57.2 NC_006938.1 + 50845 0.67 0.552474
Target:  5'- uGACGCgGGGcGAgCUCCGCcagcUCGGCAc -3'
miRNA:   3'- -UUGUGaCCU-CUgGAGGCGu---AGCCGUc -5'
31910 5' -57.2 NC_006938.1 + 24094 0.67 0.541846
Target:  5'- gGACAagUGaGGGACCUCCGC-UCGGaCGa -3'
miRNA:   3'- -UUGUg-AC-CUCUGGAGGCGuAGCC-GUc -5'
31910 5' -57.2 NC_006938.1 + 4330 0.67 0.539728
Target:  5'- cGCGcCUGGAGACCgcgcucgccgagCUGCGaaGGCAGa -3'
miRNA:   3'- uUGU-GACCUCUGGa-----------GGCGUagCCGUC- -5'
31910 5' -57.2 NC_006938.1 + 28652 0.68 0.510402
Target:  5'- cGACACgUGGcuGGAgCUCCGUcgCGGCuGg -3'
miRNA:   3'- -UUGUG-ACC--UCUgGAGGCGuaGCCGuC- -5'
31910 5' -57.2 NC_006938.1 + 47585 0.69 0.459816
Target:  5'- aGGCAuCUGGgagaGGAUCUcgaCCGCGUCGGCGu -3'
miRNA:   3'- -UUGU-GACC----UCUGGA---GGCGUAGCCGUc -5'
31910 5' -57.2 NC_006938.1 + 11082 0.7 0.402831
Target:  5'- cGCGCUGGAGcgGCacaucgCCGCcUUGGCAGg -3'
miRNA:   3'- uUGUGACCUC--UGga----GGCGuAGCCGUC- -5'
31910 5' -57.2 NC_006938.1 + 16960 0.71 0.326248
Target:  5'- --aGCUGacGGACCUCCuCGUCGGCAGc -3'
miRNA:   3'- uugUGACc-UCUGGAGGcGUAGCCGUC- -5'
31910 5' -57.2 NC_006938.1 + 56991 0.76 0.16706
Target:  5'- gAACGCUGG-GACgUUCaGCAUCGGCGGu -3'
miRNA:   3'- -UUGUGACCuCUGgAGG-CGUAGCCGUC- -5'
31910 5' -57.2 NC_006938.1 + 62780 1.05 0.001223
Target:  5'- cAACACUGGAGACCUCCGCAUCGGCAGc -3'
miRNA:   3'- -UUGUGACCUCUGGAGGCGUAGCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.