miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31911 5' -67 NC_006938.1 + 27715 0.66 0.249091
Target:  5'- aAGGuCGGUGGCGAGaaGGgUGUCCAa -3'
miRNA:   3'- -UCCcGCCGCCGCUCggCCaGCGGGUg -5'
31911 5' -67 NC_006938.1 + 5714 0.66 0.245559
Target:  5'- -uGGCGGCGGgaGAgGCCGGUggcuucuggggaaaGCCCAg -3'
miRNA:   3'- ucCCGCCGCCg-CU-CGGCCAg-------------CGGGUg -5'
31911 5' -67 NC_006938.1 + 28970 0.66 0.237478
Target:  5'- uGGGCGGgacaGAGCCGGUCcggauggacacgGCCCGa -3'
miRNA:   3'- uCCCGCCgccgCUCGGCCAG------------CGGGUg -5'
31911 5' -67 NC_006938.1 + 54397 0.66 0.237478
Target:  5'- -cGGCGGUGGCcaGAGCUGG-CGaCgCACu -3'
miRNA:   3'- ucCCGCCGCCG--CUCGGCCaGC-GgGUG- -5'
31911 5' -67 NC_006938.1 + 29990 0.66 0.226323
Target:  5'- -cGGUGGCGGCa---CGGUUGCCgACg -3'
miRNA:   3'- ucCCGCCGCCGcucgGCCAGCGGgUG- -5'
31911 5' -67 NC_006938.1 + 12378 0.66 0.226323
Target:  5'- gAGGGuUGGCGGCGAuggcaGCCG-UCaGCgCGCg -3'
miRNA:   3'- -UCCC-GCCGCCGCU-----CGGCcAG-CGgGUG- -5'
31911 5' -67 NC_006938.1 + 28803 0.66 0.220913
Target:  5'- gAGGGUGGCaGUccGGGCCGcGaCGCgCACg -3'
miRNA:   3'- -UCCCGCCGcCG--CUCGGC-CaGCGgGUG- -5'
31911 5' -67 NC_006938.1 + 56494 0.66 0.220913
Target:  5'- cGGGGaGGgaGGUgGAGCCGGggcgaCGCCCAg -3'
miRNA:   3'- -UCCCgCCg-CCG-CUCGGCCa----GCGGGUg -5'
31911 5' -67 NC_006938.1 + 8295 0.66 0.220913
Target:  5'- -cGGUGGuCGGCGA-CCGGcUCGUCUGCc -3'
miRNA:   3'- ucCCGCC-GCCGCUcGGCC-AGCGGGUG- -5'
31911 5' -67 NC_006938.1 + 6344 0.67 0.202346
Target:  5'- -cGGUGGCGGUcucgucgcuguccacGAGCCGGacuccgcguUCGUCCAg -3'
miRNA:   3'- ucCCGCCGCCG---------------CUCGGCC---------AGCGGGUg -5'
31911 5' -67 NC_006938.1 + 11866 0.67 0.200368
Target:  5'- -uGGCcaGUGGgGAGCCGGUUGaCUCGCg -3'
miRNA:   3'- ucCCGc-CGCCgCUCGGCCAGC-GGGUG- -5'
31911 5' -67 NC_006938.1 + 12153 0.67 0.200368
Target:  5'- uGGcaGCGGCGGCGAugGCCGGccacaCGCUCuCg -3'
miRNA:   3'- uCC--CGCCGCCGCU--CGGCCa----GCGGGuG- -5'
31911 5' -67 NC_006938.1 + 51640 0.67 0.186069
Target:  5'- cGGGGCGGuCGGCGAGgucaacuucUCGGggaucacugaCGCCCu- -3'
miRNA:   3'- -UCCCGCC-GCCGCUC---------GGCCa---------GCGGGug -5'
31911 5' -67 NC_006938.1 + 43840 0.68 0.177042
Target:  5'- cGGGCaGCGGUG-GCUGGUCcggGUCCGg -3'
miRNA:   3'- uCCCGcCGCCGCuCGGCCAG---CGGGUg -5'
31911 5' -67 NC_006938.1 + 26052 0.68 0.172677
Target:  5'- cAGcGGCGGCGGCcucGAGCuCGGggaucUUGUCCAa -3'
miRNA:   3'- -UC-CCGCCGCCG---CUCG-GCC-----AGCGGGUg -5'
31911 5' -67 NC_006938.1 + 48351 0.68 0.160152
Target:  5'- cGGGCGGCGGUGAcgagcgcguccuGUCGGagacCGUCgGCa -3'
miRNA:   3'- uCCCGCCGCCGCU------------CGGCCa---GCGGgUG- -5'
31911 5' -67 NC_006938.1 + 50674 0.69 0.152263
Target:  5'- aGGaGGCGGgagaggcccCGGCGAGCgccUGGUCcaggauugGCCCACa -3'
miRNA:   3'- -UC-CCGCC---------GCCGCUCG---GCCAG--------CGGGUG- -5'
31911 5' -67 NC_006938.1 + 15947 0.69 0.137535
Target:  5'- cAGGGCaGgGGCGAGgcCCGaUCGCCgACg -3'
miRNA:   3'- -UCCCGcCgCCGCUC--GGCcAGCGGgUG- -5'
31911 5' -67 NC_006938.1 + 55572 0.7 0.130672
Target:  5'- cGGGCGG-GaGCuGGGCCgGGUCGCCgagCACg -3'
miRNA:   3'- uCCCGCCgC-CG-CUCGG-CCAGCGG---GUG- -5'
31911 5' -67 NC_006938.1 + 17164 0.7 0.111648
Target:  5'- -cGGCGGCGGgauaGGGCCGGaugagguagucgaUCGCaCCGCc -3'
miRNA:   3'- ucCCGCCGCCg---CUCGGCC-------------AGCG-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.