miRNA: 3'- -CCGCcaCUUCG--UCCGGCGa--GC-GCUCG- -5'
miRNA: 3'- cCGCCACuUCGUCCGGCg--AGCGCuCG- -5'
miRNA: 3'- -CCGCCA-CUUCGU--CCGGcga-GCGCUCG- -5'
miRNA: 3'- -CCGCCACU----UCG-----UCCGGCGaGCGCUCG- -5'
miRNA: 3'- -CCGCCACUUCGUCCGGCGAGCGCUCG- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31912 | 5' | -59.6 | NC_006938.1 | + | 8145 | 0.73 | 0.208598 |
|
Target: 5'- gGGCGa-GAAGCccAGGCCGCcugCGgCGAGCg -3' miRNA: 3'- -CCGCcaCUUCG--UCCGGCGa--GC-GCUCG- -5' |
|||||||
| 31912 | 5' | -59.6 | NC_006938.1 | + | 59163 | 0.73 | 0.198193 |
|
Target: 5'- aGCGGUG-AGCAGGUCGaugUCGCGcGUg -3' miRNA: 3'- cCGCCACuUCGUCCGGCg--AGCGCuCG- -5' |
|||||||
| 31912 | 5' | -59.6 | NC_006938.1 | + | 37941 | 0.74 | 0.169657 |
|
Target: 5'- gGGCGGUgGAGGCGucGGCUcuggCGCGAGCa -3' miRNA: 3'- -CCGCCA-CUUCGU--CCGGcga-GCGCUCG- -5' |
|||||||
| 31912 | 5' | -59.6 | NC_006938.1 | + | 21638 | 0.82 | 0.047049 |
|
Target: 5'- cGGCGGUGAccagGGCgacguGGGCCGCgCGCGGGUc -3' miRNA: 3'- -CCGCCACU----UCG-----UCCGGCGaGCGCUCG- -5' |
|||||||
| 31912 | 5' | -59.6 | NC_006938.1 | + | 63454 | 1.13 | 0.000251 |
|
Target: 5'- aGGCGGUGAAGCAGGCCGCUCGCGAGCu -3' miRNA: 3'- -CCGCCACUUCGUCCGGCGAGCGCUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home