miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31922 5' -50.1 NC_006940.1 + 1462 0.66 0.917553
Target:  5'- cCGUAUgCgCAACGucugGAGUACGGUuggucucAACAGGc -3'
miRNA:   3'- -GCAUA-G-GUUGC----UUCGUGCCG-------UUGUCC- -5'
31922 5' -50.1 NC_006940.1 + 7431 0.66 0.897519
Target:  5'- gCGUGguUCCAggACGAAGCACuuGGCcccguaAGGg -3'
miRNA:   3'- -GCAU--AGGU--UGCUUCGUG--CCGuug---UCC- -5'
31922 5' -50.1 NC_006940.1 + 15578 0.66 0.89003
Target:  5'- aCGgagCCc-CGGAGCcuACGGCAGCAGc -3'
miRNA:   3'- -GCauaGGuuGCUUCG--UGCCGUUGUCc -5'
31922 5' -50.1 NC_006940.1 + 35534 0.67 0.857243
Target:  5'- cCGaUGUUCGAUGuaacAAGCccaACGGCAAUAGGc -3'
miRNA:   3'- -GC-AUAGGUUGC----UUCG---UGCCGUUGUCC- -5'
31922 5' -50.1 NC_006940.1 + 714 0.67 0.857243
Target:  5'- aCGcUAUUgAACuGAGCGCGGCcaguCAGGa -3'
miRNA:   3'- -GC-AUAGgUUGcUUCGUGCCGuu--GUCC- -5'
31922 5' -50.1 NC_006940.1 + 28328 0.68 0.839257
Target:  5'- cCGUucgacUCGACGAacacAGUaucaACGGCAACAGGc -3'
miRNA:   3'- -GCAua---GGUUGCU----UCG----UGCCGUUGUCC- -5'
31922 5' -50.1 NC_006940.1 + 14448 0.7 0.72566
Target:  5'- gCGcUAUUCGACGGuauGCuguGGCAACAGGc -3'
miRNA:   3'- -GC-AUAGGUUGCUu--CGug-CCGUUGUCC- -5'
31922 5' -50.1 NC_006940.1 + 19698 0.71 0.634209
Target:  5'- gCGUGcUCCGGCGuGGCG-GGCAuuuGCAGGc -3'
miRNA:   3'- -GCAU-AGGUUGCuUCGUgCCGU---UGUCC- -5'
31922 5' -50.1 NC_006940.1 + 15603 0.72 0.611082
Target:  5'- -aUGUUCAugGgcGCgACGGCAACGGa -3'
miRNA:   3'- gcAUAGGUugCuuCG-UGCCGUUGUCc -5'
31922 5' -50.1 NC_006940.1 + 1548 0.72 0.576569
Target:  5'- --aAUCCGGC-AA-CACGGCAACAGGu -3'
miRNA:   3'- gcaUAGGUUGcUUcGUGCCGUUGUCC- -5'
31922 5' -50.1 NC_006940.1 + 36883 0.74 0.498204
Target:  5'- cCGUGUCCGaacgGCGGAGCAgauGCGACAGa -3'
miRNA:   3'- -GCAUAGGU----UGCUUCGUgc-CGUUGUCc -5'
31922 5' -50.1 NC_006940.1 + 7739 1.12 0.001697
Target:  5'- aCGUAUCCAACGAAGCACGGCAACAGGu -3'
miRNA:   3'- -GCAUAGGUUGCUUCGUGCCGUUGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.