miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31923 3' -57.1 NC_006940.1 + 22681 0.66 0.537215
Target:  5'- cGUCCGGGGCuaagAAAUgGCUGUCauGCgcGGCa -3'
miRNA:   3'- -UAGGUCCUG----UUUGgCGGCAG--CGa-CCG- -5'
31923 3' -57.1 NC_006940.1 + 35607 0.67 0.433697
Target:  5'- -gCCGuauGACuuucGCCGCCGUaauUGCUGGCa -3'
miRNA:   3'- uaGGUc--CUGuu--UGGCGGCA---GCGACCG- -5'
31923 3' -57.1 NC_006940.1 + 37966 0.69 0.326259
Target:  5'- aGUCCAGGGCGu-CCGCCG-CGgauucGGCu -3'
miRNA:   3'- -UAGGUCCUGUuuGGCGGCaGCga---CCG- -5'
31923 3' -57.1 NC_006940.1 + 24882 0.69 0.326259
Target:  5'- aAUCaCGcGGCAuaucGCUGCCGUCGgUGGCg -3'
miRNA:   3'- -UAG-GUcCUGUu---UGGCGGCAGCgACCG- -5'
31923 3' -57.1 NC_006940.1 + 12186 1.08 0.000465
Target:  5'- uAUCCAGGACAAACCGCCGUCGCUGGCc -3'
miRNA:   3'- -UAGGUCCUGUUUGGCGGCAGCGACCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.