miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31925 3' -62 NC_006940.1 + 13934 0.66 0.299698
Target:  5'- gCCGCCgaGCUgGAGCGC-ACCUCaCAUu -3'
miRNA:   3'- aGGCGGg-UGGgUUCGCGgUGGAG-GUG- -5'
31925 3' -62 NC_006940.1 + 20488 0.66 0.285275
Target:  5'- -gCGCaCCACuuCCAcGCGCCuuACUUCCACc -3'
miRNA:   3'- agGCG-GGUG--GGUuCGCGG--UGGAGGUG- -5'
31925 3' -62 NC_006940.1 + 35516 0.67 0.264676
Target:  5'- --aGCCCAacggcaaUAGGCGCCGCCUUCGa -3'
miRNA:   3'- aggCGGGUgg-----GUUCGCGGUGGAGGUg -5'
31925 3' -62 NC_006940.1 + 28796 0.68 0.215638
Target:  5'- -aCGCCUAUUCuGGCGCCGCCaccugCCAg -3'
miRNA:   3'- agGCGGGUGGGuUCGCGGUGGa----GGUg -5'
31925 3' -62 NC_006940.1 + 25696 0.68 0.210087
Target:  5'- cCCGCCCACCgCAAuguuCGCUucgcuCCUCCGu -3'
miRNA:   3'- aGGCGGGUGG-GUUc---GCGGu----GGAGGUg -5'
31925 3' -62 NC_006940.1 + 17728 0.68 0.20466
Target:  5'- uUCCGgUaacagCACCCAGGUGCgGCC-CCGCc -3'
miRNA:   3'- -AGGCgG-----GUGGGUUCGCGgUGGaGGUG- -5'
31925 3' -62 NC_006940.1 + 16311 0.68 0.199355
Target:  5'- aCCGCgUACCUGAGCGUCAacaggacgCUCUACg -3'
miRNA:   3'- aGGCGgGUGGGUUCGCGGUg-------GAGGUG- -5'
31925 3' -62 NC_006940.1 + 19639 0.69 0.189103
Target:  5'- cCCGCCaCGCCgGAGCacGCCGCCcaauaCACu -3'
miRNA:   3'- aGGCGG-GUGGgUUCG--CGGUGGag---GUG- -5'
31925 3' -62 NC_006940.1 + 143 0.7 0.148528
Target:  5'- aUCCGCCUAUgacGGCGCCG-CUCCGCu -3'
miRNA:   3'- -AGGCGGGUGgguUCGCGGUgGAGGUG- -5'
31925 3' -62 NC_006940.1 + 37858 0.72 0.112863
Target:  5'- aCCGaCUCACCgGgggucAGCGCCGCCUUUACc -3'
miRNA:   3'- aGGC-GGGUGGgU-----UCGCGGUGGAGGUG- -5'
31925 3' -62 NC_006940.1 + 9597 0.76 0.052617
Target:  5'- uUUCGCCCGCCUgaauaaguuGAGCGCUACCaCCAUa -3'
miRNA:   3'- -AGGCGGGUGGG---------UUCGCGGUGGaGGUG- -5'
31925 3' -62 NC_006940.1 + 19911 1.09 0.000125
Target:  5'- cUCCGCCCACCCAAGCGCCACCUCCACa -3'
miRNA:   3'- -AGGCGGGUGGGUUCGCGGUGGAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.