miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31927 3' -50.5 NC_006940.1 + 10695 0.66 0.860516
Target:  5'- cUGGuGGUCguUGCCGcuUGUCUUAUCc -3'
miRNA:   3'- aGCC-CCAGguACGGUuuGUAGAAUGG- -5'
31927 3' -50.5 NC_006940.1 + 15028 0.66 0.860516
Target:  5'- gUCGGuGGUuaCCGccGCCGGAgGUCUcGCCc -3'
miRNA:   3'- -AGCC-CCA--GGUa-CGGUUUgUAGAaUGG- -5'
31927 3' -50.5 NC_006940.1 + 32352 0.67 0.842666
Target:  5'- -aGGGGgCCAcGCCAuGCGUaauagUUACCg -3'
miRNA:   3'- agCCCCaGGUaCGGUuUGUAg----AAUGG- -5'
31927 3' -50.5 NC_006940.1 + 19099 0.67 0.842666
Target:  5'- cUUGGGGUUCcgGCgCGAACGUUUaAgCg -3'
miRNA:   3'- -AGCCCCAGGuaCG-GUUUGUAGAaUgG- -5'
31927 3' -50.5 NC_006940.1 + 2475 0.67 0.833367
Target:  5'- gUGGuGGUCgGUGCCuGAAUAUCUguagACg -3'
miRNA:   3'- aGCC-CCAGgUACGG-UUUGUAGAa---UGg -5'
31927 3' -50.5 NC_006940.1 + 1235 0.78 0.285931
Target:  5'- gUCGuuGUCCGUGCCGAACGUUaccagUGCCg -3'
miRNA:   3'- -AGCccCAGGUACGGUUUGUAGa----AUGG- -5'
31927 3' -50.5 NC_006940.1 + 26002 1.13 0.001116
Target:  5'- gUCGGGGUCCAUGCCAAACAUCUUACCu -3'
miRNA:   3'- -AGCCCCAGGUACGGUUUGUAGAAUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.