miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31937 3' -53.2 NC_006940.1 + 35596 0.66 0.688037
Target:  5'- uUCGCCGCCGUaauUGCUggCAUCAcguccGCAa- -3'
miRNA:   3'- -AGUGGCGGCA---ACGG--GUAGUua---CGUag -5'
31937 3' -53.2 NC_006940.1 + 35637 0.67 0.653644
Target:  5'- aUCAgaauCC-CUGUUGCCCGUUggUuaaGCAUCg -3'
miRNA:   3'- -AGU----GGcGGCAACGGGUAGuuA---CGUAG- -5'
31937 3' -53.2 NC_006940.1 + 15017 0.67 0.630586
Target:  5'- cCGCCGCCGgaggucucGCCCAUCucuuuaccGGUGCcauUCc -3'
miRNA:   3'- aGUGGCGGCaa------CGGGUAG--------UUACGu--AG- -5'
31937 3' -53.2 NC_006940.1 + 22283 0.67 0.630586
Target:  5'- gUCGCaguGCaGUgcauaGCCCAUCcAUGCAUCg -3'
miRNA:   3'- -AGUGg--CGgCAa----CGGGUAGuUACGUAG- -5'
31937 3' -53.2 NC_006940.1 + 12535 0.68 0.561788
Target:  5'- aUCGCCGCCGUaaUGgUCGUUAGcUGCGg- -3'
miRNA:   3'- -AGUGGCGGCA--ACgGGUAGUU-ACGUag -5'
31937 3' -53.2 NC_006940.1 + 4588 1.11 0.00069
Target:  5'- cUCACCGCCGUUGCCCAUCAAUGCAUCa -3'
miRNA:   3'- -AGUGGCGGCAACGGGUAGUUACGUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.