miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31942 3' -60.3 NC_006940.1 + 27396 0.66 0.37852
Target:  5'- aCCACCaGCCAGGaacCUuCCUGCCcgACg -3'
miRNA:   3'- -GGUGGcCGGUCCa--GAuGGGCGGugUG- -5'
31942 3' -60.3 NC_006940.1 + 15861 0.66 0.361359
Target:  5'- aUCACaGGCCAuGGUUUugCCGUCGaaaGCu -3'
miRNA:   3'- -GGUGgCCGGU-CCAGAugGGCGGUg--UG- -5'
31942 3' -60.3 NC_006940.1 + 17720 0.67 0.323986
Target:  5'- uCCugCGGuuccgguaacagcacCCAGGUgCggcCCCGCCACcACg -3'
miRNA:   3'- -GGugGCC---------------GGUCCA-Gau-GGGCGGUG-UG- -5'
31942 3' -60.3 NC_006940.1 + 29012 0.67 0.313197
Target:  5'- cCCACauuGUCgacgAGGUCUugCCGCCACcCa -3'
miRNA:   3'- -GGUGgc-CGG----UCCAGAugGGCGGUGuG- -5'
31942 3' -60.3 NC_006940.1 + 36951 0.67 0.305659
Target:  5'- gCCGCaGGCCAGauGUCUACUauUGCCgaACGCg -3'
miRNA:   3'- -GGUGgCCGGUC--CAGAUGG--GCGG--UGUG- -5'
31942 3' -60.3 NC_006940.1 + 2789 0.68 0.283883
Target:  5'- gUCACCGcGCCu--UCUACCCGCUccgucuGCACc -3'
miRNA:   3'- -GGUGGC-CGGuccAGAUGGGCGG------UGUG- -5'
31942 3' -60.3 NC_006940.1 + 18470 0.7 0.214491
Target:  5'- -aGCUGaGCUuauuGGGgUUACCCGCCGCACg -3'
miRNA:   3'- ggUGGC-CGG----UCCaGAUGGGCGGUGUG- -5'
31942 3' -60.3 NC_006940.1 + 626 0.7 0.208962
Target:  5'- gCACCGGCCAacagcucGUCcugACUgGCCGCGCu -3'
miRNA:   3'- gGUGGCCGGUc------CAGa--UGGgCGGUGUG- -5'
31942 3' -60.3 NC_006940.1 + 19622 0.7 0.198273
Target:  5'- aCCG-CGGCCugcaaaUGCCCGCCACGCc -3'
miRNA:   3'- -GGUgGCCGGuccag-AUGGGCGGUGUG- -5'
31942 3' -60.3 NC_006940.1 + 15341 0.73 0.136059
Target:  5'- aCCcCCGGCgAGG----CCCGCCACACu -3'
miRNA:   3'- -GGuGGCCGgUCCagauGGGCGGUGUG- -5'
31942 3' -60.3 NC_006940.1 + 9582 0.73 0.118566
Target:  5'- -gGCgGGCCAGGUUguuuucGCCCGCCugAa -3'
miRNA:   3'- ggUGgCCGGUCCAGa-----UGGGCGGugUg -5'
31942 3' -60.3 NC_006940.1 + 36904 0.76 0.075721
Target:  5'- gCCugCGGCCAGGUUgccGCCCuCuCGCGCg -3'
miRNA:   3'- -GGugGCCGGUCCAGa--UGGGcG-GUGUG- -5'
31942 3' -60.3 NC_006940.1 + 36501 1.11 0.000161
Target:  5'- gCCACCGGCCAGGUCUACCCGCCACACg -3'
miRNA:   3'- -GGUGGCCGGUCCAGAUGGGCGGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.