Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31949 | 5' | -59.6 | NC_006943.1 | + | 5550 | 0.66 | 0.073715 |
Target: 5'- aUCGGCUaUGGCUGcGAGCucuguAGGGGAGGGGa -3' miRNA: 3'- -AGCCGG-GUCGGU-CUCG-----UCCUCUUCCU- -5' |
|||||||
31949 | 5' | -59.6 | NC_006943.1 | + | 1645 | 0.66 | 0.071291 |
Target: 5'- cUGGCUgGGCCgaacugcuGGGGCcuucgaacccggGGGGGggGGAg -3' miRNA: 3'- aGCCGGgUCGG--------UCUCG------------UCCUCuuCCU- -5' |
|||||||
31949 | 5' | -59.6 | NC_006943.1 | + | 5207 | 0.66 | 0.066672 |
Target: 5'- gCGGCggugaagaCAGCCAgGAGguGGAuGAGGGc -3' miRNA: 3'- aGCCGg-------GUCGGU-CUCguCCU-CUUCCu -5' |
|||||||
31949 | 5' | -59.6 | NC_006943.1 | + | 4357 | 0.68 | 0.051616 |
Target: 5'- cCGGCgCCuGCUacugcguggauaacgAGggGGCGGGAGAGGGGg -3' miRNA: 3'- aGCCG-GGuCGG---------------UC--UCGUCCUCUUCCU- -5' |
|||||||
31949 | 5' | -59.6 | NC_006943.1 | + | 1966 | 0.68 | 0.049229 |
Target: 5'- -gGGCUCGGagGGGGCAGGGGGuccauGGGGu -3' miRNA: 3'- agCCGGGUCggUCUCGUCCUCU-----UCCU- -5' |
|||||||
31949 | 5' | -59.6 | NC_006943.1 | + | 1665 | 0.73 | 0.01706 |
Target: 5'- cCGccaCCCcGCCGGAGCAGGAGAAGc- -3' miRNA: 3'- aGCc--GGGuCGGUCUCGUCCUCUUCcu -5' |
|||||||
31949 | 5' | -59.6 | NC_006943.1 | + | 5705 | 0.81 | 0.003601 |
Target: 5'- aCGGCuCCGGCCAGGGCGGacAGggGGAu -3' miRNA: 3'- aGCCG-GGUCGGUCUCGUCc-UCuuCCU- -5' |
|||||||
31949 | 5' | -59.6 | NC_006943.1 | + | 1627 | 1.09 | 1e-05 |
Target: 5'- uUCGGCCCAGCCAGAGCAGGAGAAGGAg -3' miRNA: 3'- -AGCCGGGUCGGUCUCGUCCUCUUCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home