Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31953 | 3' | -59.2 | NC_006943.1 | + | 5970 | 1 | 0.000103 |
Target: 5'- gCUCCAACCUCGCGUCCA-CGCCACCCa -3' miRNA: 3'- -GAGGUUGGAGCGCAGGUgGCGGUGGG- -5' |
|||||||
31953 | 3' | -59.2 | NC_006943.1 | + | 5173 | 0.73 | 0.021106 |
Target: 5'- aUCC-ACCUCucugGCuGUCuuCACCGCCGCCCu -3' miRNA: 3'- gAGGuUGGAG----CG-CAG--GUGGCGGUGGG- -5' |
|||||||
31953 | 3' | -59.2 | NC_006943.1 | + | 4905 | 0.7 | 0.037417 |
Target: 5'- gCUCCAuguCCUCGCc-CCuCCGCCuuACCCc -3' miRNA: 3'- -GAGGUu--GGAGCGcaGGuGGCGG--UGGG- -5' |
|||||||
31953 | 3' | -59.2 | NC_006943.1 | + | 2390 | 0.71 | 0.031003 |
Target: 5'- gCUCU-GCCUCGCGUCUcCCGugaggaucacgaguuCCACCCu -3' miRNA: 3'- -GAGGuUGGAGCGCAGGuGGC---------------GGUGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home