Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31982 | 3' | -54.7 | NC_006948.1 | + | 1699 | 0.66 | 0.157871 |
|
Target: 5'- cACGGguUCG-CGGCGCAUuucgcggAGCUUGGCg -3' miRNA: 3'- -UGUUguGGCgGUCGUGUA-------UCGAGCCG- -5' |
|||||||
| 31982 | 3' | -54.7 | NC_006948.1 | + | 4905 | 0.67 | 0.134155 |
|
Target: 5'- uGCcAUACUGCCgGGCAUcauuUGGCUgGGCc -3' miRNA: 3'- -UGuUGUGGCGG-UCGUGu---AUCGAgCCG- -5' |
|||||||
| 31982 | 3' | -54.7 | NC_006948.1 | + | 5390 | 0.68 | 0.113374 |
|
Target: 5'- gGCGAgugUGCCGCC-GCACcUAGUgUCGGCc -3' miRNA: 3'- -UGUU---GUGGCGGuCGUGuAUCG-AGCCG- -5' |
|||||||
| 31982 | 3' | -54.7 | NC_006948.1 | + | 3232 | 0.68 | 0.105936 |
|
Target: 5'- aGCAugACCGUCugcuGCAUgaaggaggcgAUAGUUUGGCc -3' miRNA: 3'- -UGUugUGGCGGu---CGUG----------UAUCGAGCCG- -5' |
|||||||
| 31982 | 3' | -54.7 | NC_006948.1 | + | 5513 | 0.68 | 0.098957 |
|
Target: 5'- cACGACuuGCCGCCGGCAUcgugGGCcgcccaaGGCu -3' miRNA: 3'- -UGUUG--UGGCGGUCGUGua--UCGag-----CCG- -5' |
|||||||
| 31982 | 3' | -54.7 | NC_006948.1 | + | 1427 | 1.11 | 0.000025 |
|
Target: 5'- gACAACACCGCCAGCACAUAGCUCGGCc -3' miRNA: 3'- -UGUUGUGGCGGUCGUGUAUCGAGCCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home