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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31990 | 3' | -58 | NC_006948.1 | + | 4888 | 0.67 | 0.058225 |
Target: 5'- aGAUG--GCCGgaGCUGCCGCgugaugGCc- -3' miRNA: 3'- aCUACuaCGGCgaCGACGGCGa-----CGac -5' |
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31990 | 3' | -58 | NC_006948.1 | + | 4245 | 0.7 | 0.034534 |
Target: 5'- aGGUGggGCCGUgaUGCguugGCCGCUGaUGu -3' miRNA: 3'- aCUACuaCGGCG--ACGa---CGGCGACgAC- -5' |
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31990 | 3' | -58 | NC_006948.1 | + | 5115 | 1.07 | 0.000016 |
Target: 5'- cUGAUGAUGCCGCUGCUGCCGCUGCUGc -3' miRNA: 3'- -ACUACUACGGCGACGACGGCGACGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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