miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31992 5' -51.7 NC_006949.1 + 7288 0.66 0.853292
Target:  5'- cGGCAGCGGCACGacgcCAacagccauaccaaccAGCGGagaaaugaugUCCUg -3'
miRNA:   3'- -CCGUCGCUGUGCaa--GU---------------UCGUCa---------AGGG- -5'
31992 5' -51.7 NC_006949.1 + 10415 0.67 0.812771
Target:  5'- cGGCAG-GACGgcugcUGUUCAGGcCGGgagccaUCCCg -3'
miRNA:   3'- -CCGUCgCUGU-----GCAAGUUC-GUCa-----AGGG- -5'
31992 5' -51.7 NC_006949.1 + 32003 0.68 0.782848
Target:  5'- cGGUAGCGACAUuaUCAGGUcguAGUUUUUu -3'
miRNA:   3'- -CCGUCGCUGUGcaAGUUCG---UCAAGGG- -5'
31992 5' -51.7 NC_006949.1 + 5930 0.68 0.762045
Target:  5'- cGGCGGUGAUACGggUuucggucuuguaGAGCGauUUCCCg -3'
miRNA:   3'- -CCGUCGCUGUGCaaG------------UUCGUc-AAGGG- -5'
31992 5' -51.7 NC_006949.1 + 15743 0.74 0.443569
Target:  5'- uGGCAaaGAUACGUUCucagaAAGCAGUUagCCCa -3'
miRNA:   3'- -CCGUcgCUGUGCAAG-----UUCGUCAA--GGG- -5'
31992 5' -51.7 NC_006949.1 + 4965 1.15 0.00084
Target:  5'- uGGCAGCGACACGUUCAAGCAGUUCCCu -3'
miRNA:   3'- -CCGUCGCUGUGCAAGUUCGUCAAGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.