miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31995 5' -51.6 NC_006949.1 + 33507 0.66 0.831788
Target:  5'- uGCCGG-GCUggGCCAUgcCAGCAucuuGCAa -3'
miRNA:   3'- -CGGCUgCGA--CGGUAaaGUCGUuu--CGU- -5'
31995 5' -51.6 NC_006949.1 + 14745 0.67 0.802497
Target:  5'- uGCCaaugGugGCUGCCAacUCGGUAu-GCGa -3'
miRNA:   3'- -CGG----CugCGACGGUaaAGUCGUuuCGU- -5'
31995 5' -51.6 NC_006949.1 + 26747 0.67 0.792323
Target:  5'- uGCCGAU-UUGCUuUUUCAGCAcccGGCAa -3'
miRNA:   3'- -CGGCUGcGACGGuAAAGUCGUu--UCGU- -5'
31995 5' -51.6 NC_006949.1 + 45283 0.67 0.768243
Target:  5'- cGCUGACGCUucGUCAUgUCGGUAAuugucgcguucgccAGCGu -3'
miRNA:   3'- -CGGCUGCGA--CGGUAaAGUCGUU--------------UCGU- -5'
31995 5' -51.6 NC_006949.1 + 19566 0.68 0.749909
Target:  5'- gGCCGGCGUgGUCGU---GGUGAAGCAc -3'
miRNA:   3'- -CGGCUGCGaCGGUAaagUCGUUUCGU- -5'
31995 5' -51.6 NC_006949.1 + 26608 0.68 0.738942
Target:  5'- gGCUGGCGUU-CCgAUUUCGGUAuuGCAg -3'
miRNA:   3'- -CGGCUGCGAcGG-UAAAGUCGUuuCGU- -5'
31995 5' -51.6 NC_006949.1 + 7015 0.68 0.704246
Target:  5'- cCCGAagaaagcaaacagUGCUGUCAUaUCGGCAGGGUc -3'
miRNA:   3'- cGGCU-------------GCGACGGUAaAGUCGUUUCGu -5'
31995 5' -51.6 NC_006949.1 + 14383 0.68 0.694016
Target:  5'- uGCCGcCGCUGCCG----AGCAAcGCu -3'
miRNA:   3'- -CGGCuGCGACGGUaaagUCGUUuCGu -5'
31995 5' -51.6 NC_006949.1 + 14542 0.69 0.682586
Target:  5'- cGCUGGUGCUGCCAUgcUAGCGGccAGUg -3'
miRNA:   3'- -CGGCUGCGACGGUAaaGUCGUU--UCGu -5'
31995 5' -51.6 NC_006949.1 + 28440 0.7 0.624888
Target:  5'- aCCGACGCUGgCGgaaCGGCGuaGAGCu -3'
miRNA:   3'- cGGCUGCGACgGUaaaGUCGU--UUCGu -5'
31995 5' -51.6 NC_006949.1 + 18732 0.7 0.578779
Target:  5'- gGCUGACGUgUGCCAguggCAGUAucGCGg -3'
miRNA:   3'- -CGGCUGCG-ACGGUaaa-GUCGUuuCGU- -5'
31995 5' -51.6 NC_006949.1 + 10393 1.12 0.001063
Target:  5'- aGCCGACGCUGCCAUUUCAGCAAAGCAa -3'
miRNA:   3'- -CGGCUGCGACGGUAAAGUCGUUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.